miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12414 5' -52.3 NC_003324.1 + 593 0.67 0.826641
Target:  5'- uGGUCGA-GCUGCCGACcuuGGUGAucGCc -3'
miRNA:   3'- gCUAGCUgCGGUGGCUGuu-CUACU--CG- -5'
12414 5' -52.3 NC_003324.1 + 1106 0.67 0.861481
Target:  5'- aGAUUGAgccCGCCGCCGuCAGc--GAGCu -3'
miRNA:   3'- gCUAGCU---GCGGUGGCuGUUcuaCUCG- -5'
12414 5' -52.3 NC_003324.1 + 1392 0.67 0.853114
Target:  5'- -cAUCGAUG-CGCCGACGGuGcUGGGCg -3'
miRNA:   3'- gcUAGCUGCgGUGGCUGUU-CuACUCG- -5'
12414 5' -52.3 NC_003324.1 + 2526 0.7 0.705023
Target:  5'- ---gUGACGCCACCGACGAaca-GGCg -3'
miRNA:   3'- gcuaGCUGCGGUGGCUGUUcuacUCG- -5'
12414 5' -52.3 NC_003324.1 + 3728 0.66 0.902302
Target:  5'- gCGAUCGAaGCUgguggcuuugugauuGCCGGCGguccaauggcAGAUGAuGCg -3'
miRNA:   3'- -GCUAGCUgCGG---------------UGGCUGU----------UCUACU-CG- -5'
12414 5' -52.3 NC_003324.1 + 4260 0.66 0.882083
Target:  5'- aGGUCGaucagauGCGCCACggcguuuccgccggUGGCAAGAUGucccGCa -3'
miRNA:   3'- gCUAGC-------UGCGGUG--------------GCUGUUCUACu---CG- -5'
12414 5' -52.3 NC_003324.1 + 4529 1.11 0.001717
Target:  5'- uCGAUCGACGCCACCGACAAGAUGAGCc -3'
miRNA:   3'- -GCUAGCUGCGGUGGCUGUUCUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 4575 0.68 0.798303
Target:  5'- -aGUCGcguCGCCGCCGuAgAGGAugUGAGCc -3'
miRNA:   3'- gcUAGCu--GCGGUGGC-UgUUCU--ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 5047 0.68 0.798303
Target:  5'- uCGAUCGACaCCGCCGcCAAGGacccGAacGCg -3'
miRNA:   3'- -GCUAGCUGcGGUGGCuGUUCUa---CU--CG- -5'
12414 5' -52.3 NC_003324.1 + 5288 0.7 0.705023
Target:  5'- gCGGUCGccGCGCCAgCGAUAgagGGGUaAGCg -3'
miRNA:   3'- -GCUAGC--UGCGGUgGCUGU---UCUAcUCG- -5'
12414 5' -52.3 NC_003324.1 + 5354 0.66 0.885099
Target:  5'- ---aCGGCGCC-CCGACGcugaccauGGAugucggugucaUGAGCg -3'
miRNA:   3'- gcuaGCUGCGGuGGCUGU--------UCU-----------ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 6820 0.67 0.825724
Target:  5'- gGAUCGGCGCCguuggccaccuuuACCGAuguCGGGAgaaagGAGa -3'
miRNA:   3'- gCUAGCUGCGG-------------UGGCU---GUUCUa----CUCg -5'
12414 5' -52.3 NC_003324.1 + 8282 0.72 0.560814
Target:  5'- uGGUCGaagugccaggcgcGCGCCGCCGGgCA--GUGAGCa -3'
miRNA:   3'- gCUAGC-------------UGCGGUGGCU-GUucUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 11311 0.67 0.861481
Target:  5'- --uUUGGCGUgACCGAgGcGGUGAGUa -3'
miRNA:   3'- gcuAGCUGCGgUGGCUgUuCUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 13331 0.69 0.726557
Target:  5'- --uUCGACGCUugCGGCcauGAUGAccuGCg -3'
miRNA:   3'- gcuAGCUGCGGugGCUGuu-CUACU---CG- -5'
12414 5' -52.3 NC_003324.1 + 17396 0.68 0.785515
Target:  5'- uCGAUCGGuggugaccagguccUGCCAuCCGAUGcaGUGAGCg -3'
miRNA:   3'- -GCUAGCU--------------GCGGU-GGCUGUucUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 17551 0.7 0.661181
Target:  5'- aCGcUCGGCGCgA-CGGCAGGAcuuggUGAGCa -3'
miRNA:   3'- -GCuAGCUGCGgUgGCUGUUCU-----ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 17587 0.66 0.869606
Target:  5'- aGAUCGACacccagauaguGCC-CCGGCGcGccguUGAGCa -3'
miRNA:   3'- gCUAGCUG-----------CGGuGGCUGUuCu---ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 17862 0.67 0.844513
Target:  5'- aGAUCGcCGgcaUCACCGGCAuGAUG-GCc -3'
miRNA:   3'- gCUAGCuGC---GGUGGCUGUuCUACuCG- -5'
12414 5' -52.3 NC_003324.1 + 18143 0.7 0.661181
Target:  5'- --uUCGACGCCgguuucgccgacACCGGCAAGGUcguGGCu -3'
miRNA:   3'- gcuAGCUGCGG------------UGGCUGUUCUAc--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.