miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12414 5' -52.3 NC_003324.1 + 1392 0.67 0.853114
Target:  5'- -cAUCGAUG-CGCCGACGGuGcUGGGCg -3'
miRNA:   3'- gcUAGCUGCgGUGGCUGUU-CuACUCG- -5'
12414 5' -52.3 NC_003324.1 + 48436 0.68 0.778515
Target:  5'- -cAUCGaagaGCGCCgcGCCGAgAAGAUGGuGCg -3'
miRNA:   3'- gcUAGC----UGCGG--UGGCUgUUCUACU-CG- -5'
12414 5' -52.3 NC_003324.1 + 49112 0.68 0.788491
Target:  5'- cCGGU-GACGCgAUCGcCAAGAUG-GCg -3'
miRNA:   3'- -GCUAgCUGCGgUGGCuGUUCUACuCG- -5'
12414 5' -52.3 NC_003324.1 + 48619 0.68 0.79733
Target:  5'- aGGUCGGCGCCcgcauccggcuccGCCGcaACAucaucGGcAUGAGCc -3'
miRNA:   3'- gCUAGCUGCGG-------------UGGC--UGU-----UC-UACUCG- -5'
12414 5' -52.3 NC_003324.1 + 5047 0.68 0.798303
Target:  5'- uCGAUCGACaCCGCCGcCAAGGacccGAacGCg -3'
miRNA:   3'- -GCUAGCUGcGGUGGCuGUUCUa---CU--CG- -5'
12414 5' -52.3 NC_003324.1 + 38478 0.68 0.807939
Target:  5'- uGAUCGACGagGCCGACcgccuGGUGAa- -3'
miRNA:   3'- gCUAGCUGCggUGGCUGuu---CUACUcg -5'
12414 5' -52.3 NC_003324.1 + 53493 0.67 0.826641
Target:  5'- ---cCGAgGCCgaauGCCGGCGAugcccuGAUGAGCu -3'
miRNA:   3'- gcuaGCUgCGG----UGGCUGUU------CUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 42401 0.67 0.83479
Target:  5'- uGGUCGcggguccgcaacaGCGCCagcGCCaGACAGGAagcGAGCa -3'
miRNA:   3'- gCUAGC-------------UGCGG---UGG-CUGUUCUa--CUCG- -5'
12414 5' -52.3 NC_003324.1 + 56472 0.67 0.844513
Target:  5'- uGAUCGAUGCaGCCuugucggucGAUuggucaaacgAGGAUGAGCg -3'
miRNA:   3'- gCUAGCUGCGgUGG---------CUG----------UUCUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 25131 0.68 0.778515
Target:  5'- uGG-CGAUGCCGCCGgugACGcGAUcGAGCu -3'
miRNA:   3'- gCUaGCUGCGGUGGC---UGUuCUA-CUCG- -5'
12414 5' -52.3 NC_003324.1 + 19382 0.69 0.747708
Target:  5'- gGAUCGACGCCggcgcgcgucgcGCCGuGCAugAGGUcGGCu -3'
miRNA:   3'- gCUAGCUGCGG------------UGGC-UGU--UCUAcUCG- -5'
12414 5' -52.3 NC_003324.1 + 49973 0.69 0.715832
Target:  5'- gCGAUCGGCGCUGCCcu---GAUGGGg -3'
miRNA:   3'- -GCUAGCUGCGGUGGcuguuCUACUCg -5'
12414 5' -52.3 NC_003324.1 + 30238 0.75 0.427603
Target:  5'- cCGAgCGACGCCACCGcCGAcaccaucggcGAUGAuGCg -3'
miRNA:   3'- -GCUaGCUGCGGUGGCuGUU----------CUACU-CG- -5'
12414 5' -52.3 NC_003324.1 + 46045 0.72 0.551043
Target:  5'- uGAUCGucgaAgGCCACuUGcCGAGAUGAGCg -3'
miRNA:   3'- gCUAGC----UgCGGUG-GCuGUUCUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 26682 0.72 0.561903
Target:  5'- gGAUCGAUGCCGCUGu-----UGAGCg -3'
miRNA:   3'- gCUAGCUGCGGUGGCuguucuACUCG- -5'
12414 5' -52.3 NC_003324.1 + 49217 0.72 0.594794
Target:  5'- aCGAUcCGaACGCCugCGACGccauGAUcGGGCa -3'
miRNA:   3'- -GCUA-GC-UGCGGugGCUGUu---CUA-CUCG- -5'
12414 5' -52.3 NC_003324.1 + 49652 0.71 0.639052
Target:  5'- uCGA-CGACGCUGCCGAUAucaaGGGCg -3'
miRNA:   3'- -GCUaGCUGCGGUGGCUGUucuaCUCG- -5'
12414 5' -52.3 NC_003324.1 + 18143 0.7 0.661181
Target:  5'- --uUCGACGCCgguuucgccgacACCGGCAAGGUcguGGCu -3'
miRNA:   3'- gcuAGCUGCGG------------UGGCUGUUCUAc--UCG- -5'
12414 5' -52.3 NC_003324.1 + 30477 0.7 0.694142
Target:  5'- uCGaAUCGGCGCCGCCGAgCAGGcccucgGAaacuGCg -3'
miRNA:   3'- -GC-UAGCUGCGGUGGCU-GUUCua----CU----CG- -5'
12414 5' -52.3 NC_003324.1 + 2526 0.7 0.705023
Target:  5'- ---gUGACGCCACCGACGAaca-GGCg -3'
miRNA:   3'- gcuaGCUGCGGUGGCUGUUcuacUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.