miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12416 3' -54.6 NC_003324.1 + 29714 0.69 0.609907
Target:  5'- aGGCGGCGGCGUUGCGccagaaGCaGG-CaGAGCc -3'
miRNA:   3'- -CCGUUGUUGCAACGC------CGgCCaG-CUCG- -5'
12416 3' -54.6 NC_003324.1 + 4927 0.69 0.577298
Target:  5'- cGGCcGCAACGUUGuuGCCGG-CGccauAGUc -3'
miRNA:   3'- -CCGuUGUUGCAACgcCGGCCaGC----UCG- -5'
12416 3' -54.6 NC_003324.1 + 51558 0.69 0.631755
Target:  5'- cGGCAACGGCGUUcGCaaggguaaGGCgccuuCGGUauuccCGAGCa -3'
miRNA:   3'- -CCGUUGUUGCAA-CG--------CCG-----GCCA-----GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 48723 0.69 0.608816
Target:  5'- uGGCucaugccGAUGAUGUUGCGGCggagcCGGaugCGGGCg -3'
miRNA:   3'- -CCG-------UUGUUGCAACGCCG-----GCCa--GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 35529 0.69 0.631755
Target:  5'- cGCAcCGACGUUgGUGGCUGuGaucugCGAGCg -3'
miRNA:   3'- cCGUuGUUGCAA-CGCCGGC-Ca----GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 30088 0.68 0.686206
Target:  5'- cGCAGCAucGCGUcgccagagUGCaccGGCCGGgaUCGAuGCg -3'
miRNA:   3'- cCGUUGU--UGCA--------ACG---CCGGCC--AGCU-CG- -5'
12416 3' -54.6 NC_003324.1 + 20563 0.68 0.675375
Target:  5'- cGCAACAucccgcuccGCGaUGCGGC-GaUCGAGCg -3'
miRNA:   3'- cCGUUGU---------UGCaACGCCGgCcAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 7508 0.68 0.653604
Target:  5'- gGGCAGCAGCacccUUGCcaaucuccGuGCCccauuGGUCGAGCa -3'
miRNA:   3'- -CCGUUGUUGc---AACG--------C-CGG-----CCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 29216 0.68 0.654696
Target:  5'- cGGCAGCAcuACgGUgcgcucaccaagacgGCGGCUGuUCGGGCc -3'
miRNA:   3'- -CCGUUGU--UG-CAa--------------CGCCGGCcAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 14797 0.68 0.664505
Target:  5'- cGCGGCGAagaacGCGGCCGGcaUCG-GCa -3'
miRNA:   3'- cCGUUGUUgcaa-CGCCGGCC--AGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 35036 0.68 0.686206
Target:  5'- cGGCGGCAGCa--GCGGCCugaucGUCGucGCu -3'
miRNA:   3'- -CCGUUGUUGcaaCGCCGGc----CAGCu-CG- -5'
12416 3' -54.6 NC_003324.1 + 14578 0.68 0.686206
Target:  5'- cGGCcugcCGGCGcaaGCGGCCGG-CG-GCg -3'
miRNA:   3'- -CCGuu--GUUGCaa-CGCCGGCCaGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 32236 0.68 0.642685
Target:  5'- uGGUAGCGugGUaGUGGucagcgcccCCGGUCGuGUc -3'
miRNA:   3'- -CCGUUGUugCAaCGCC---------GGCCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 56655 0.68 0.660148
Target:  5'- aGCGAUAGCGgcguuaugggcgGCGGCaUGGgucgCGGGCa -3'
miRNA:   3'- cCGUUGUUGCaa----------CGCCG-GCCa---GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 4697 0.67 0.718346
Target:  5'- cGCAACAACGaccaggGCGGCUGGcUgGAa- -3'
miRNA:   3'- cCGUUGUUGCaa----CGCCGGCC-AgCUcg -5'
12416 3' -54.6 NC_003324.1 + 50251 0.67 0.733104
Target:  5'- aGGCGAaagcccGCGUcgagaaagagaaugaUGCGccGCCGGUCGAcgGCa -3'
miRNA:   3'- -CCGUUgu----UGCA---------------ACGC--CGGCCAGCU--CG- -5'
12416 3' -54.6 NC_003324.1 + 49862 0.67 0.739371
Target:  5'- aGGCGGaguACGgcaaGUGaGCCGG-CGGGCa -3'
miRNA:   3'- -CCGUUgu-UGCaa--CGC-CGGCCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 19003 0.67 0.739371
Target:  5'- cGGCGGCuGCac-GCGGCUGGccUCGAacGCg -3'
miRNA:   3'- -CCGUUGuUGcaaCGCCGGCC--AGCU--CG- -5'
12416 3' -54.6 NC_003324.1 + 55150 0.67 0.748698
Target:  5'- cGGCAACGGCuacaucugGCugacacaGGCCGGaUGGGCu -3'
miRNA:   3'- -CCGUUGUUGcaa-----CG-------CCGGCCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 16339 0.67 0.749729
Target:  5'- cGCGACGGCGUUGCcGUCGaUCGcGUc -3'
miRNA:   3'- cCGUUGUUGCAACGcCGGCcAGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.