miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12416 3' -54.6 NC_003324.1 + 18424 0.75 0.307963
Target:  5'- aGGCGACGcuggucauggucugcGCGaccUUGCcGCCGGUCGGGUu -3'
miRNA:   3'- -CCGUUGU---------------UGC---AACGcCGGCCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 39386 0.73 0.387146
Target:  5'- aGCAGCuuGCGcUGCGGCUcGUUGGGCu -3'
miRNA:   3'- cCGUUGu-UGCaACGCCGGcCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 37355 0.72 0.414493
Target:  5'- cGGCGAUuguCGUa-CuGCCGGUCGAGCu -3'
miRNA:   3'- -CCGUUGuu-GCAacGcCGGCCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 23783 0.72 0.433372
Target:  5'- cGGCGGC-GCGUU-CGGCCucGG-CGAGCu -3'
miRNA:   3'- -CCGUUGuUGCAAcGCCGG--CCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 23748 0.72 0.45274
Target:  5'- aGCuGCGACGUUGC-GCCGGaaaUCGGGg -3'
miRNA:   3'- cCGuUGUUGCAACGcCGGCC---AGCUCg -5'
12416 3' -54.6 NC_003324.1 + 23150 0.71 0.486711
Target:  5'- uGGCGGCaAACGUcuUGCcggcgcccacgguauGGUCGG-CGAGCg -3'
miRNA:   3'- -CCGUUG-UUGCA--ACG---------------CCGGCCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 51558 0.69 0.631755
Target:  5'- cGGCAACGGCGUUcGCaaggguaaGGCgccuuCGGUauuccCGAGCa -3'
miRNA:   3'- -CCGUUGUUGCAA-CG--------CCG-----GCCA-----GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 35529 0.69 0.631755
Target:  5'- cGCAcCGACGUUgGUGGCUGuGaucugCGAGCg -3'
miRNA:   3'- cCGUuGUUGCAA-CGCCGGC-Ca----GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 18793 0.7 0.566506
Target:  5'- cGGCAACGaugcgcggguccAUGgcGCGGCgaaGGUCG-GCg -3'
miRNA:   3'- -CCGUUGU------------UGCaaCGCCGg--CCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 9652 0.7 0.555767
Target:  5'- cGGCAACGccaacGCGcuggGCGGCgUGGggcCGGGCg -3'
miRNA:   3'- -CCGUUGU-----UGCaa--CGCCG-GCCa--GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 43004 0.7 0.545088
Target:  5'- gGGuCGGCAACGgagaacCGGCCGGUagugGGGCc -3'
miRNA:   3'- -CC-GUUGUUGCaac---GCCGGCCAg---CUCG- -5'
12416 3' -54.6 NC_003324.1 + 23528 0.7 0.544024
Target:  5'- cGGCAcgaucggugccccACAGCGUgGCGGCgGG-CGcGCu -3'
miRNA:   3'- -CCGU-------------UGUUGCAaCGCCGgCCaGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 35480 0.66 0.759969
Target:  5'- gGGCGAgGAaaccaugcGCGGgCGGcCGAGCa -3'
miRNA:   3'- -CCGUUgUUgcaa----CGCCgGCCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 22611 0.66 0.769075
Target:  5'- cGGCAAUAACGUcGUGuuccucaCCGGUaccccguUGAGCa -3'
miRNA:   3'- -CCGUUGUUGCAaCGCc------GGCCA-------GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 54345 0.66 0.77008
Target:  5'- cGGCu-CGGCGcUGauGCCGGUCcauGGCa -3'
miRNA:   3'- -CCGuuGUUGCaACgcCGGCCAGc--UCG- -5'
12416 3' -54.6 NC_003324.1 + 15224 0.66 0.78987
Target:  5'- cGGCGGCGagccuuuucACGUgGC-GCCGuGUCGAcGCc -3'
miRNA:   3'- -CCGUUGU---------UGCAaCGcCGGC-CAGCU-CG- -5'
12416 3' -54.6 NC_003324.1 + 29549 0.66 0.798569
Target:  5'- cGCGcccGCAGCcagGCGGCCGugucaucGUCGAGg -3'
miRNA:   3'- cCGU---UGUUGcaaCGCCGGC-------CAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 45217 0.66 0.799528
Target:  5'- aGGCA-CAuCGUUGUugauacgccGGCagCGGUCGAGa -3'
miRNA:   3'- -CCGUuGUuGCAACG---------CCG--GCCAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 3159 0.66 0.799528
Target:  5'- uGGCAAgAGCGggagcgccgUGCGGCCa-UUGAGa -3'
miRNA:   3'- -CCGUUgUUGCa--------ACGCCGGccAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 20609 0.76 0.255808
Target:  5'- cGGCgcugAugGGCGcUUGCGGUCGG-CGGGCa -3'
miRNA:   3'- -CCG----UugUUGC-AACGCCGGCCaGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.