miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12416 3' -54.6 NC_003324.1 + 48454 0.67 0.728906
Target:  5'- aGGCGccaaggGCAAC--UGCGaGCCGGcuuggagugCGAGCa -3'
miRNA:   3'- -CCGU------UGUUGcaACGC-CGGCCa--------GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 39953 0.67 0.728906
Target:  5'- cGGCAAgGAa---GCGGCCgacaagaaGGUCGAGg -3'
miRNA:   3'- -CCGUUgUUgcaaCGCCGG--------CCAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 40496 0.67 0.725748
Target:  5'- aGGCGACGACGaagcGCcagacgaaggcgaaGGCCGGU-GAGg -3'
miRNA:   3'- -CCGUUGUUGCaa--CG--------------CCGGCCAgCUCg -5'
12416 3' -54.6 NC_003324.1 + 53695 0.67 0.718346
Target:  5'- cGGCGACGuuCGUcGCGcaGCUcGUCGAGUg -3'
miRNA:   3'- -CCGUUGUu-GCAaCGC--CGGcCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 4697 0.67 0.718346
Target:  5'- cGCAACAACGaccaggGCGGCUGGcUgGAa- -3'
miRNA:   3'- cCGUUGUUGCaa----CGCCGGCC-AgCUcg -5'
12416 3' -54.6 NC_003324.1 + 47728 0.67 0.707702
Target:  5'- cGGCGugccacagcuCGACGaugGCGGCCcGGUCGccgucaugcgcGGCg -3'
miRNA:   3'- -CCGUu---------GUUGCaa-CGCCGG-CCAGC-----------UCG- -5'
12416 3' -54.6 NC_003324.1 + 18681 0.67 0.707702
Target:  5'- uGGaugaAGCGcuuGCG-UGCGGaaaGGUCGGGCa -3'
miRNA:   3'- -CCg---UUGU---UGCaACGCCgg-CCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 31027 0.67 0.696985
Target:  5'- uGGUAGCGAC----CGGCgCGGUCG-GCg -3'
miRNA:   3'- -CCGUUGUUGcaacGCCG-GCCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 40126 0.67 0.696985
Target:  5'- cGCAACuACGgugGaCGGCCGa-CGAGCu -3'
miRNA:   3'- cCGUUGuUGCaa-C-GCCGGCcaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 19488 0.67 0.696985
Target:  5'- gGGCGAUAGCGUcgGCG-UCGG-CGuGCu -3'
miRNA:   3'- -CCGUUGUUGCAa-CGCcGGCCaGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 14578 0.68 0.686206
Target:  5'- cGGCcugcCGGCGcaaGCGGCCGG-CG-GCg -3'
miRNA:   3'- -CCGuu--GUUGCaa-CGCCGGCCaGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 35036 0.68 0.686206
Target:  5'- cGGCGGCAGCa--GCGGCCugaucGUCGucGCu -3'
miRNA:   3'- -CCGUUGUUGcaaCGCCGGc----CAGCu-CG- -5'
12416 3' -54.6 NC_003324.1 + 30088 0.68 0.686206
Target:  5'- cGCAGCAucGCGUcgccagagUGCaccGGCCGGgaUCGAuGCg -3'
miRNA:   3'- cCGUUGU--UGCA--------ACG---CCGGCC--AGCU-CG- -5'
12416 3' -54.6 NC_003324.1 + 20563 0.68 0.675375
Target:  5'- cGCAACAucccgcuccGCGaUGCGGC-GaUCGAGCg -3'
miRNA:   3'- cCGUUGU---------UGCaACGCCGgCcAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 14797 0.68 0.664505
Target:  5'- cGCGGCGAagaacGCGGCCGGcaUCG-GCa -3'
miRNA:   3'- cCGUUGUUgcaa-CGCCGGCC--AGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 56655 0.68 0.660148
Target:  5'- aGCGAUAGCGgcguuaugggcgGCGGCaUGGgucgCGGGCa -3'
miRNA:   3'- cCGUUGUUGCaa----------CGCCG-GCCa---GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 29216 0.68 0.654696
Target:  5'- cGGCAGCAcuACgGUgcgcucaccaagacgGCGGCUGuUCGGGCc -3'
miRNA:   3'- -CCGUUGU--UG-CAa--------------CGCCGGCcAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 7508 0.68 0.653604
Target:  5'- gGGCAGCAGCacccUUGCcaaucuccGuGCCccauuGGUCGAGCa -3'
miRNA:   3'- -CCGUUGUUGc---AACG--------C-CGG-----CCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 32236 0.68 0.642685
Target:  5'- uGGUAGCGugGUaGUGGucagcgcccCCGGUCGuGUc -3'
miRNA:   3'- -CCGUUGUugCAaCGCC---------GGCCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 51558 0.69 0.631755
Target:  5'- cGGCAACGGCGUUcGCaaggguaaGGCgccuuCGGUauuccCGAGCa -3'
miRNA:   3'- -CCGUUGUUGCAA-CG--------CCG-----GCCA-----GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.