miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12418 5' -55.7 NC_003324.1 + 48990 0.72 0.407166
Target:  5'- uCGACGAUCUUGugGCgGgugGCGGaGUCCu -3'
miRNA:   3'- -GCUGCUAGAGCugUGgU---UGCCgCGGG- -5'
12418 5' -55.7 NC_003324.1 + 24043 0.72 0.416297
Target:  5'- uGGCGGccuUCUCGGCACUGGCGGgcuuuaccuucuCGCCg -3'
miRNA:   3'- gCUGCU---AGAGCUGUGGUUGCC------------GCGGg -5'
12418 5' -55.7 NC_003324.1 + 23399 0.71 0.425553
Target:  5'- uGACGcgCUCGGCuuucucguugGCCGcgucggUGGCGCCCu -3'
miRNA:   3'- gCUGCuaGAGCUG----------UGGUu-----GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 34036 0.71 0.444425
Target:  5'- aGGCGAgccaUgggguguagaaUGAUACCcACGGCGCCCa -3'
miRNA:   3'- gCUGCUag--A-----------GCUGUGGuUGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 11643 0.71 0.463758
Target:  5'- aCGGCGGUCU-GACGCCGAUcaacaaGCCCa -3'
miRNA:   3'- -GCUGCUAGAgCUGUGGUUGccg---CGGG- -5'
12418 5' -55.7 NC_003324.1 + 7984 0.71 0.463758
Target:  5'- uCGGCGAcCUUGAC-CUGACGGUGaCCUg -3'
miRNA:   3'- -GCUGCUaGAGCUGuGGUUGCCGC-GGG- -5'
12418 5' -55.7 NC_003324.1 + 17579 0.71 0.469643
Target:  5'- gCGACGAcagaUCGACACCcagauagugcccCGGCGCgCCg -3'
miRNA:   3'- -GCUGCUag--AGCUGUGGuu----------GCCGCG-GG- -5'
12418 5' -55.7 NC_003324.1 + 20974 0.71 0.473588
Target:  5'- -cGCGAgUUCGAUAUCAcccugucCGGCGCCCg -3'
miRNA:   3'- gcUGCUaGAGCUGUGGUu------GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 21564 0.71 0.473588
Target:  5'- aGGCGGUUUUgGACGuuGGuacCGGCGCCCa -3'
miRNA:   3'- gCUGCUAGAG-CUGUggUU---GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 48005 0.71 0.473588
Target:  5'- gGAcCGAaacUCUCGAC-CCAGCGGauaaGCCg -3'
miRNA:   3'- gCU-GCU---AGAGCUGuGGUUGCCg---CGGg -5'
12418 5' -55.7 NC_003324.1 + 21668 0.7 0.493554
Target:  5'- --uCGG-CUCGACGCCgaagAugGGCGCCg -3'
miRNA:   3'- gcuGCUaGAGCUGUGG----UugCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 45433 0.7 0.503681
Target:  5'- uCGGCGGUgcagccaguuUUCGACACUGGCGGCagguauuCCCg -3'
miRNA:   3'- -GCUGCUA----------GAGCUGUGGUUGCCGc------GGG- -5'
12418 5' -55.7 NC_003324.1 + 48600 0.7 0.503681
Target:  5'- cCGAacccaaUCGACACgCAGguCGGCGCCCg -3'
miRNA:   3'- -GCUgcuag-AGCUGUG-GUU--GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 31563 0.7 0.524197
Target:  5'- -cGCGGUCUCGAUauGCCAA-GGUucgugGCCCa -3'
miRNA:   3'- gcUGCUAGAGCUG--UGGUUgCCG-----CGGG- -5'
12418 5' -55.7 NC_003324.1 + 26648 0.7 0.524197
Target:  5'- --cCGAUCUCGGCGagGAUGuGCGUCCg -3'
miRNA:   3'- gcuGCUAGAGCUGUggUUGC-CGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 12210 0.7 0.531453
Target:  5'- gGACGGUCUCgcgggucucgcagaGAUGCCGaaugguaugaugGCGGCGUUCg -3'
miRNA:   3'- gCUGCUAGAG--------------CUGUGGU------------UGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 9255 0.7 0.538745
Target:  5'- aCGACGAUCcgaucgccauuguuaUCGAcCGCUAuuuGCGGCGCg- -3'
miRNA:   3'- -GCUGCUAG---------------AGCU-GUGGU---UGCCGCGgg -5'
12418 5' -55.7 NC_003324.1 + 43161 0.69 0.545023
Target:  5'- uGGCGAga-CGACAUUcuCGGCGUCCu -3'
miRNA:   3'- gCUGCUagaGCUGUGGuuGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 17797 0.69 0.545023
Target:  5'- cCGGCGAUCUgGuaGCguGCCucACGGCGCgCa -3'
miRNA:   3'- -GCUGCUAGAgC--UG--UGGu-UGCCGCGgG- -5'
12418 5' -55.7 NC_003324.1 + 34509 0.69 0.545023
Target:  5'- uCGuCGGguccuUCUUGcCGCCAGCGGaauCGCCCa -3'
miRNA:   3'- -GCuGCU-----AGAGCuGUGGUUGCC---GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.