miRNA display CGI


Results 1 - 20 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12418 5' -55.7 NC_003324.1 + 5336 1.11 0.000862
Target:  5'- cCGACGAUCUCGACACCAACGGCGCCCc -3'
miRNA:   3'- -GCUGCUAGAGCUGUGGUUGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 5393 0.82 0.096595
Target:  5'- gCGGCGAUUUCGGCucggaaGAUGGCGCCCg -3'
miRNA:   3'- -GCUGCUAGAGCUGugg---UUGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 44509 0.79 0.145765
Target:  5'- gCGAcCGAagUCUCGGCGCC--CGGUGCCCg -3'
miRNA:   3'- -GCU-GCU--AGAGCUGUGGuuGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 18429 0.78 0.18536
Target:  5'- aGACGAUCaugcUUGGCcuGCCAAuccuCGGCGCCCg -3'
miRNA:   3'- gCUGCUAG----AGCUG--UGGUU----GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 26919 0.77 0.211248
Target:  5'- gCGGCGAUCgacgaGGCACUcagcggAGCGGCGCCa -3'
miRNA:   3'- -GCUGCUAGag---CUGUGG------UUGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 49342 0.76 0.246359
Target:  5'- gCGAgGAUCUgGACACgaaGACGG-GCCCg -3'
miRNA:   3'- -GCUgCUAGAgCUGUGg--UUGCCgCGGG- -5'
12418 5' -55.7 NC_003324.1 + 8412 0.75 0.252661
Target:  5'- cCGACGGUCaccguaaCGAgCGCCGACGGCGuuaCCCu -3'
miRNA:   3'- -GCUGCUAGa------GCU-GUGGUUGCCGC---GGG- -5'
12418 5' -55.7 NC_003324.1 + 49214 0.75 0.2792
Target:  5'- cCGACGAUCcgaacgccugCGACGCCAugauCGGgcaGCCCg -3'
miRNA:   3'- -GCUGCUAGa---------GCUGUGGUu---GCCg--CGGG- -5'
12418 5' -55.7 NC_003324.1 + 13007 0.75 0.286173
Target:  5'- uGGCGAUCUgcagggCGGCAUCAACGccCGCCCu -3'
miRNA:   3'- gCUGCUAGA------GCUGUGGUUGCc-GCGGG- -5'
12418 5' -55.7 NC_003324.1 + 24007 0.75 0.286173
Target:  5'- -cGCGugaacCUCGACGCCAuguCGGCGCUCu -3'
miRNA:   3'- gcUGCua---GAGCUGUGGUu--GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 15122 0.74 0.300527
Target:  5'- --uCGGUCUCGGCGUCGacACGGCGCCa -3'
miRNA:   3'- gcuGCUAGAGCUGUGGU--UGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 11706 0.74 0.314673
Target:  5'- aGACGAUCUauaGGCAUCAAgGGUcauggcucucaugGCCCa -3'
miRNA:   3'- gCUGCUAGAg--CUGUGGUUgCCG-------------CGGG- -5'
12418 5' -55.7 NC_003324.1 + 49434 0.74 0.315432
Target:  5'- --cCGAUCgUCGACACCGcuguUGGCGCCg -3'
miRNA:   3'- gcuGCUAG-AGCUGUGGUu---GCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 55181 0.73 0.355103
Target:  5'- gGAUGGgcUCUCGcccACGCCAugucgAUGGUGCCCa -3'
miRNA:   3'- gCUGCU--AGAGC---UGUGGU-----UGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 39775 0.73 0.355103
Target:  5'- uCGAUGAUCUCGGCACgGugcACcuCGCCCu -3'
miRNA:   3'- -GCUGCUAGAGCUGUGgU---UGccGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 6710 0.73 0.358424
Target:  5'- aGGCGGcauucuccuuUCUCccgacaucgguaaagGugGCCAACGGCGCCg -3'
miRNA:   3'- gCUGCU----------AGAG---------------CugUGGUUGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 3333 0.73 0.371927
Target:  5'- aGACGGUCgcCGACugCAGUGGCuCCCu -3'
miRNA:   3'- gCUGCUAGa-GCUGugGUUGCCGcGGG- -5'
12418 5' -55.7 NC_003324.1 + 19376 0.72 0.380539
Target:  5'- -aGCGAUggaUCGACGCCGGCGcGCGUCg -3'
miRNA:   3'- gcUGCUAg--AGCUGUGGUUGC-CGCGGg -5'
12418 5' -55.7 NC_003324.1 + 6149 0.72 0.398161
Target:  5'- uCGGCGAUCUCGAcCAgCGAUGGCaggauGCUg -3'
miRNA:   3'- -GCUGCUAGAGCU-GUgGUUGCCG-----CGGg -5'
12418 5' -55.7 NC_003324.1 + 38333 0.72 0.407166
Target:  5'- gGGCG-UCUCGaucacgaggGCACCGggGCGGCGCUg -3'
miRNA:   3'- gCUGCuAGAGC---------UGUGGU--UGCCGCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.