miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12418 5' -55.7 NC_003324.1 + 48600 0.7 0.503681
Target:  5'- cCGAacccaaUCGACACgCAGguCGGCGCCCg -3'
miRNA:   3'- -GCUgcuag-AGCUGUG-GUU--GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 24043 0.72 0.416297
Target:  5'- uGGCGGccuUCUCGGCACUGGCGGgcuuuaccuucuCGCCg -3'
miRNA:   3'- gCUGCU---AGAGCUGUGGUUGCC------------GCGGg -5'
12418 5' -55.7 NC_003324.1 + 23399 0.71 0.425553
Target:  5'- uGACGcgCUCGGCuuucucguugGCCGcgucggUGGCGCCCu -3'
miRNA:   3'- gCUGCuaGAGCUG----------UGGUu-----GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 34036 0.71 0.444425
Target:  5'- aGGCGAgccaUgggguguagaaUGAUACCcACGGCGCCCa -3'
miRNA:   3'- gCUGCUag--A-----------GCUGUGGuUGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 7984 0.71 0.463758
Target:  5'- uCGGCGAcCUUGAC-CUGACGGUGaCCUg -3'
miRNA:   3'- -GCUGCUaGAGCUGuGGUUGCCGC-GGG- -5'
12418 5' -55.7 NC_003324.1 + 11643 0.71 0.463758
Target:  5'- aCGGCGGUCU-GACGCCGAUcaacaaGCCCa -3'
miRNA:   3'- -GCUGCUAGAgCUGUGGUUGccg---CGGG- -5'
12418 5' -55.7 NC_003324.1 + 17579 0.71 0.469643
Target:  5'- gCGACGAcagaUCGACACCcagauagugcccCGGCGCgCCg -3'
miRNA:   3'- -GCUGCUag--AGCUGUGGuu----------GCCGCG-GG- -5'
12418 5' -55.7 NC_003324.1 + 21564 0.71 0.473588
Target:  5'- aGGCGGUUUUgGACGuuGGuacCGGCGCCCa -3'
miRNA:   3'- gCUGCUAGAG-CUGUggUU---GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 45433 0.7 0.503681
Target:  5'- uCGGCGGUgcagccaguuUUCGACACUGGCGGCagguauuCCCg -3'
miRNA:   3'- -GCUGCUA----------GAGCUGUGGUUGCCGc------GGG- -5'
12418 5' -55.7 NC_003324.1 + 38333 0.72 0.407166
Target:  5'- gGGCG-UCUCGaucacgaggGCACCGggGCGGCGCUg -3'
miRNA:   3'- gCUGCuAGAGC---------UGUGGU--UGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 19376 0.72 0.380539
Target:  5'- -aGCGAUggaUCGACGCCGGCGcGCGUCg -3'
miRNA:   3'- gcUGCUAg--AGCUGUGGUUGC-CGCGGg -5'
12418 5' -55.7 NC_003324.1 + 3333 0.73 0.371927
Target:  5'- aGACGGUCgcCGACugCAGUGGCuCCCu -3'
miRNA:   3'- gCUGCUAGa-GCUGugGUUGCCGcGGG- -5'
12418 5' -55.7 NC_003324.1 + 5393 0.82 0.096595
Target:  5'- gCGGCGAUUUCGGCucggaaGAUGGCGCCCg -3'
miRNA:   3'- -GCUGCUAGAGCUGugg---UUGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 49214 0.75 0.2792
Target:  5'- cCGACGAUCcgaacgccugCGACGCCAugauCGGgcaGCCCg -3'
miRNA:   3'- -GCUGCUAGa---------GCUGUGGUu---GCCg--CGGG- -5'
12418 5' -55.7 NC_003324.1 + 13007 0.75 0.286173
Target:  5'- uGGCGAUCUgcagggCGGCAUCAACGccCGCCCu -3'
miRNA:   3'- gCUGCUAGA------GCUGUGGUUGCc-GCGGG- -5'
12418 5' -55.7 NC_003324.1 + 15122 0.74 0.300527
Target:  5'- --uCGGUCUCGGCGUCGacACGGCGCCa -3'
miRNA:   3'- gcuGCUAGAGCUGUGGU--UGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 11706 0.74 0.314673
Target:  5'- aGACGAUCUauaGGCAUCAAgGGUcauggcucucaugGCCCa -3'
miRNA:   3'- gCUGCUAGAg--CUGUGGUUgCCG-------------CGGG- -5'
12418 5' -55.7 NC_003324.1 + 39775 0.73 0.355103
Target:  5'- uCGAUGAUCUCGGCACgGugcACcuCGCCCu -3'
miRNA:   3'- -GCUGCUAGAGCUGUGgU---UGccGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 55181 0.73 0.355103
Target:  5'- gGAUGGgcUCUCGcccACGCCAugucgAUGGUGCCCa -3'
miRNA:   3'- gCUGCU--AGAGC---UGUGGU-----UGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 6710 0.73 0.358424
Target:  5'- aGGCGGcauucuccuuUCUCccgacaucgguaaagGugGCCAACGGCGCCg -3'
miRNA:   3'- gCUGCU----------AGAG---------------CugUGGUUGCCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.