miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12418 5' -55.7 NC_003324.1 + 53977 0.66 0.766773
Target:  5'- uGAUGAUCUUG-CGgCGG-GGCGCaCCa -3'
miRNA:   3'- gCUGCUAGAGCuGUgGUUgCCGCG-GG- -5'
12418 5' -55.7 NC_003324.1 + 39046 0.67 0.683981
Target:  5'- -cAUGAUCuucaucgaaUCGACgGCCAagggucgagACGGCGCCUa -3'
miRNA:   3'- gcUGCUAG---------AGCUG-UGGU---------UGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 25219 0.67 0.662599
Target:  5'- uGAgcuCGAUCgCGuCACCGGCGGCaucGCCa -3'
miRNA:   3'- gCU---GCUAGaGCuGUGGUUGCCG---CGGg -5'
12418 5' -55.7 NC_003324.1 + 44509 0.79 0.145765
Target:  5'- gCGAcCGAagUCUCGGCGCC--CGGUGCCCg -3'
miRNA:   3'- -GCU-GCU--AGAGCUGUGGuuGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 48273 0.66 0.756775
Target:  5'- aGugG-UCUCGGagaACCAGCGaacGCGgCCg -3'
miRNA:   3'- gCugCuAGAGCUg--UGGUUGC---CGCgGG- -5'
12418 5' -55.7 NC_003324.1 + 23788 0.66 0.755768
Target:  5'- cCGGCGGacaUCgaggcagUCGACAUCGAugugaagccCGGCGCgCCg -3'
miRNA:   3'- -GCUGCU---AG-------AGCUGUGGUU---------GCCGCG-GG- -5'
12418 5' -55.7 NC_003324.1 + 54871 0.66 0.746656
Target:  5'- gCGGCGGUCUgCGAUGCgAGCGa-GCUCg -3'
miRNA:   3'- -GCUGCUAGA-GCUGUGgUUGCcgCGGG- -5'
12418 5' -55.7 NC_003324.1 + 56106 0.66 0.746656
Target:  5'- uGGCGAUCUUcuugACC-ACGGCGCgCu -3'
miRNA:   3'- gCUGCUAGAGcug-UGGuUGCCGCGgG- -5'
12418 5' -55.7 NC_003324.1 + 29736 0.66 0.715673
Target:  5'- aCGGCGGaCUCGAUcCCGgcucaggcgGCGGCGUUg -3'
miRNA:   3'- -GCUGCUaGAGCUGuGGU---------UGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 51828 0.67 0.683981
Target:  5'- uCGuCGAgCUCGaAUACUgcuUGGCGCCCu -3'
miRNA:   3'- -GCuGCUaGAGC-UGUGGuu-GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 14618 0.67 0.705174
Target:  5'- aCGuCGGcCUUGAgCGCCAgcgccuugucGCGGaCGCCCu -3'
miRNA:   3'- -GCuGCUaGAGCU-GUGGU----------UGCC-GCGGG- -5'
12418 5' -55.7 NC_003324.1 + 32342 0.66 0.726094
Target:  5'- uGGCGAgcgUCcCGACacgACCGGgGGCGCUg -3'
miRNA:   3'- gCUGCU---AGaGCUG---UGGUUgCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 3375 0.66 0.765779
Target:  5'- aGGCgGAUCuUUGACauguuuauGCCGACGGUugccgccGCCCu -3'
miRNA:   3'- gCUG-CUAG-AGCUG--------UGGUUGCCG-------CGGG- -5'
12418 5' -55.7 NC_003324.1 + 27821 0.67 0.70412
Target:  5'- aCGACaGAgccCUUcGCGCCGAagugguuCGGUGCCCg -3'
miRNA:   3'- -GCUG-CUa--GAGcUGUGGUU-------GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 15238 0.66 0.756775
Target:  5'- cCGGCGAUggagaUCGGCGgCGAgccuuuucacgUGGCGCCg -3'
miRNA:   3'- -GCUGCUAg----AGCUGUgGUU-----------GCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 36904 0.66 0.736425
Target:  5'- gGGCGAUagcuuuauaucgCUCGAUGCCuACGGCGaCg -3'
miRNA:   3'- gCUGCUA------------GAGCUGUGGuUGCCGCgGg -5'
12418 5' -55.7 NC_003324.1 + 30323 0.67 0.694606
Target:  5'- cCGAUGGUgUCGGCGgUGGCGuCGCUCg -3'
miRNA:   3'- -GCUGCUAgAGCUGUgGUUGCcGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 23260 0.67 0.673309
Target:  5'- gCGGuacCGcgCUCGccgaccAUACCGugGGCGCCg -3'
miRNA:   3'- -GCU---GCuaGAGC------UGUGGUugCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 30221 0.66 0.756775
Target:  5'- aGACGAUUUcCGACAacgcagcuauCCAGCGcGuCGaCCCu -3'
miRNA:   3'- gCUGCUAGA-GCUGU----------GGUUGC-C-GC-GGG- -5'
12418 5' -55.7 NC_003324.1 + 41081 0.66 0.755768
Target:  5'- aCGACGAUcCUCGAC-CUgaucuauGACGcauGCgGCCCg -3'
miRNA:   3'- -GCUGCUA-GAGCUGuGG-------UUGC---CG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.