miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12418 5' -55.7 NC_003324.1 + 1379 0.68 0.618509
Target:  5'- uGcCGAUCcgugacaUCGauGCGCCGACGGUGCUg -3'
miRNA:   3'- gCuGCUAG-------AGC--UGUGGUUGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 1520 0.68 0.60776
Target:  5'- gCGAgGAUC-CGGCGgCAguggugcGCGGCGCUa -3'
miRNA:   3'- -GCUgCUAGaGCUGUgGU-------UGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 2421 0.69 0.56611
Target:  5'- cCGAUGAUgaagccgcCGACGCCGGCGGCuuguucCCCa -3'
miRNA:   3'- -GCUGCUAga------GCUGUGGUUGCCGc-----GGG- -5'
12418 5' -55.7 NC_003324.1 + 2713 0.66 0.726094
Target:  5'- gCGGCGGcagUCUccaagCGAUAgCCGAuCGcGCGCCCa -3'
miRNA:   3'- -GCUGCU---AGA-----GCUGU-GGUU-GC-CGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 3333 0.73 0.371927
Target:  5'- aGACGGUCgcCGACugCAGUGGCuCCCu -3'
miRNA:   3'- gCUGCUAGa-GCUGugGUUGCCGcGGG- -5'
12418 5' -55.7 NC_003324.1 + 3375 0.66 0.765779
Target:  5'- aGGCgGAUCuUUGACauguuuauGCCGACGGUugccgccGCCCu -3'
miRNA:   3'- gCUG-CUAG-AGCUG--------UGGUUGCCG-------CGGG- -5'
12418 5' -55.7 NC_003324.1 + 4363 0.68 0.619585
Target:  5'- gGAC-AUCUUGcCACCGGCGGaaaCGCCg -3'
miRNA:   3'- gCUGcUAGAGCuGUGGUUGCC---GCGGg -5'
12418 5' -55.7 NC_003324.1 + 5336 1.11 0.000862
Target:  5'- cCGACGAUCUCGACACCAACGGCGCCCc -3'
miRNA:   3'- -GCUGCUAGAGCUGUGGUUGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 5393 0.82 0.096595
Target:  5'- gCGGCGAUUUCGGCucggaaGAUGGCGCCCg -3'
miRNA:   3'- -GCUGCUAGAGCUGugg---UUGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 5503 0.69 0.576733
Target:  5'- aGAaGAaCUCGGCGCCGcagguGCGGgCGCCa -3'
miRNA:   3'- gCUgCUaGAGCUGUGGU-----UGCC-GCGGg -5'
12418 5' -55.7 NC_003324.1 + 6149 0.72 0.398161
Target:  5'- uCGGCGAUCUCGAcCAgCGAUGGCaggauGCUg -3'
miRNA:   3'- -GCUGCUAGAGCU-GUgGUUGCCG-----CGGg -5'
12418 5' -55.7 NC_003324.1 + 6710 0.73 0.358424
Target:  5'- aGGCGGcauucuccuuUCUCccgacaucgguaaagGugGCCAACGGCGCCg -3'
miRNA:   3'- gCUGCU----------AGAG---------------CugUGGUUGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 7984 0.71 0.463758
Target:  5'- uCGGCGAcCUUGAC-CUGACGGUGaCCUg -3'
miRNA:   3'- -GCUGCUaGAGCUGuGGUUGCCGC-GGG- -5'
12418 5' -55.7 NC_003324.1 + 8412 0.75 0.252661
Target:  5'- cCGACGGUCaccguaaCGAgCGCCGACGGCGuuaCCCu -3'
miRNA:   3'- -GCUGCUAGa------GCU-GUGGUUGCCGC---GGG- -5'
12418 5' -55.7 NC_003324.1 + 9255 0.7 0.538745
Target:  5'- aCGACGAUCcgaucgccauuguuaUCGAcCGCUAuuuGCGGCGCg- -3'
miRNA:   3'- -GCUGCUAG---------------AGCU-GUGGU---UGCCGCGgg -5'
12418 5' -55.7 NC_003324.1 + 11643 0.71 0.463758
Target:  5'- aCGGCGGUCU-GACGCCGAUcaacaaGCCCa -3'
miRNA:   3'- -GCUGCUAGAgCUGUGGUUGccg---CGGG- -5'
12418 5' -55.7 NC_003324.1 + 11706 0.74 0.314673
Target:  5'- aGACGAUCUauaGGCAUCAAgGGUcauggcucucaugGCCCa -3'
miRNA:   3'- gCUGCUAGAg--CUGUGGUUgCCG-------------CGGG- -5'
12418 5' -55.7 NC_003324.1 + 12210 0.7 0.531453
Target:  5'- gGACGGUCUCgcgggucucgcagaGAUGCCGaaugguaugaugGCGGCGUUCg -3'
miRNA:   3'- gCUGCUAGAG--------------CUGUGGU------------UGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 13007 0.75 0.286173
Target:  5'- uGGCGAUCUgcagggCGGCAUCAACGccCGCCCu -3'
miRNA:   3'- gCUGCUAGA------GCUGUGGUUGCc-GCGGG- -5'
12418 5' -55.7 NC_003324.1 + 13304 0.68 0.630346
Target:  5'- -aACGAUCggGACGCCGAaaagcuugaGGUGCUCg -3'
miRNA:   3'- gcUGCUAGagCUGUGGUUg--------CCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.