miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12418 5' -55.7 NC_003324.1 + 56106 0.66 0.746656
Target:  5'- uGGCGAUCUUcuugACC-ACGGCGCgCu -3'
miRNA:   3'- gCUGCUAGAGcug-UGGuUGCCGCGgG- -5'
12418 5' -55.7 NC_003324.1 + 55928 0.66 0.766773
Target:  5'- gGAUGAUgC-CGACACCGACGacGUGUUCc -3'
miRNA:   3'- gCUGCUA-GaGCUGUGGUUGC--CGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 55352 0.66 0.736425
Target:  5'- -cGCGAUCaagacgCGGCACCGGauauuCGaGCGCCUu -3'
miRNA:   3'- gcUGCUAGa-----GCUGUGGUU-----GC-CGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 55181 0.73 0.355103
Target:  5'- gGAUGGgcUCUCGcccACGCCAugucgAUGGUGCCCa -3'
miRNA:   3'- gCUGCU--AGAGC---UGUGGU-----UGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 55048 0.66 0.736425
Target:  5'- gGACGG-CUgGGCugCcgcGACGGCGCa- -3'
miRNA:   3'- gCUGCUaGAgCUGugG---UUGCCGCGgg -5'
12418 5' -55.7 NC_003324.1 + 54871 0.66 0.746656
Target:  5'- gCGGCGGUCUgCGAUGCgAGCGa-GCUCg -3'
miRNA:   3'- -GCUGCUAGA-GCUGUGgUUGCcgCGGG- -5'
12418 5' -55.7 NC_003324.1 + 53977 0.66 0.766773
Target:  5'- uGAUGAUCUUG-CGgCGG-GGCGCaCCa -3'
miRNA:   3'- gCUGCUAGAGCuGUgGUUgCCGCG-GG- -5'
12418 5' -55.7 NC_003324.1 + 53396 0.68 0.630346
Target:  5'- --uUGAUCU-GGCAUCGcggucACGGCGCCUa -3'
miRNA:   3'- gcuGCUAGAgCUGUGGU-----UGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 52704 0.67 0.705174
Target:  5'- -cGCGAUcCUCGcguccaucaGCACUAuCGGUGCCUg -3'
miRNA:   3'- gcUGCUA-GAGC---------UGUGGUuGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 51828 0.67 0.683981
Target:  5'- uCGuCGAgCUCGaAUACUgcuUGGCGCCCu -3'
miRNA:   3'- -GCuGCUaGAGC-UGUGGuu-GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 51001 0.66 0.766773
Target:  5'- uCGACGAggCUCGGacgaagGCCGACGaaaugGCCCa -3'
miRNA:   3'- -GCUGCUa-GAGCUg-----UGGUUGCcg---CGGG- -5'
12418 5' -55.7 NC_003324.1 + 50667 0.68 0.60776
Target:  5'- gCGACGGUUgCGaaGCGCCAaucuucgACGGUGaCCCc -3'
miRNA:   3'- -GCUGCUAGaGC--UGUGGU-------UGCCGC-GGG- -5'
12418 5' -55.7 NC_003324.1 + 49905 0.66 0.726094
Target:  5'- uCGGCGcgCUCGugcuCGCCuuCGcUGCCCc -3'
miRNA:   3'- -GCUGCuaGAGCu---GUGGuuGCcGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 49434 0.74 0.315432
Target:  5'- --cCGAUCgUCGACACCGcuguUGGCGCCg -3'
miRNA:   3'- gcuGCUAG-AGCUGUGGUu---GCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 49413 0.68 0.619585
Target:  5'- -cGCGAUCggCGAgccCGgCAGCGGCGCUUg -3'
miRNA:   3'- gcUGCUAGa-GCU---GUgGUUGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 49367 0.69 0.576733
Target:  5'- uCGACGAUCUgGGCGaccUCGAaaGCGaCCCg -3'
miRNA:   3'- -GCUGCUAGAgCUGU---GGUUgcCGC-GGG- -5'
12418 5' -55.7 NC_003324.1 + 49342 0.76 0.246359
Target:  5'- gCGAgGAUCUgGACACgaaGACGG-GCCCg -3'
miRNA:   3'- -GCUgCUAGAgCUGUGg--UUGCCgCGGG- -5'
12418 5' -55.7 NC_003324.1 + 49214 0.75 0.2792
Target:  5'- cCGACGAUCcgaacgccugCGACGCCAugauCGGgcaGCCCg -3'
miRNA:   3'- -GCUGCUAGa---------GCUGUGGUu---GCCg--CGGG- -5'
12418 5' -55.7 NC_003324.1 + 49054 0.66 0.750717
Target:  5'- gCGGCGGggcaauccauccggCUCuGCACCGgggccgaaaGCGGCGUCUa -3'
miRNA:   3'- -GCUGCUa-------------GAGcUGUGGU---------UGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 48990 0.72 0.407166
Target:  5'- uCGACGAUCUUGugGCgGgugGCGGaGUCCu -3'
miRNA:   3'- -GCUGCUAGAGCugUGgU---UGCCgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.