miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12418 5' -55.7 NC_003324.1 + 14618 0.67 0.705174
Target:  5'- aCGuCGGcCUUGAgCGCCAgcgccuugucGCGGaCGCCCu -3'
miRNA:   3'- -GCuGCUaGAGCU-GUGGU----------UGCC-GCGGG- -5'
12418 5' -55.7 NC_003324.1 + 15122 0.74 0.300527
Target:  5'- --uCGGUCUCGGCGUCGacACGGCGCCa -3'
miRNA:   3'- gcuGCUAGAGCUGUGGU--UGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 15238 0.66 0.756775
Target:  5'- cCGGCGAUggagaUCGGCGgCGAgccuuuucacgUGGCGCCg -3'
miRNA:   3'- -GCUGCUAg----AGCUGUgGUU-----------GCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 17579 0.71 0.469643
Target:  5'- gCGACGAcagaUCGACACCcagauagugcccCGGCGCgCCg -3'
miRNA:   3'- -GCUGCUag--AGCUGUGGuu----------GCCGCG-GG- -5'
12418 5' -55.7 NC_003324.1 + 17700 0.68 0.619585
Target:  5'- --cCGAgCUCGGCGgcaucgugcUCAACGGCGCgCCg -3'
miRNA:   3'- gcuGCUaGAGCUGU---------GGUUGCCGCG-GG- -5'
12418 5' -55.7 NC_003324.1 + 17797 0.69 0.545023
Target:  5'- cCGGCGAUCUgGuaGCguGCCucACGGCGCgCa -3'
miRNA:   3'- -GCUGCUAGAgC--UG--UGGu-UGCCGCGgG- -5'
12418 5' -55.7 NC_003324.1 + 18001 0.66 0.746656
Target:  5'- uGuCGAUCgcuUCgGAUACCGAuuggcCGGCGCCa -3'
miRNA:   3'- gCuGCUAG---AG-CUGUGGUU-----GCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 18429 0.78 0.18536
Target:  5'- aGACGAUCaugcUUGGCcuGCCAAuccuCGGCGCCCg -3'
miRNA:   3'- gCUGCUAG----AGCUG--UGGUU----GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 18786 0.66 0.766773
Target:  5'- --uCGAUCUCGGCAacgaugcgcggguCCAuggcgcggcgaagguCGGCGCCa -3'
miRNA:   3'- gcuGCUAGAGCUGU-------------GGUu--------------GCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 19376 0.72 0.380539
Target:  5'- -aGCGAUggaUCGACGCCGGCGcGCGUCg -3'
miRNA:   3'- gcUGCUAg--AGCUGUGGUUGC-CGCGGg -5'
12418 5' -55.7 NC_003324.1 + 19505 0.66 0.715673
Target:  5'- uCGGCGugcuUCUUGcCGCgGAaGGCGUCCa -3'
miRNA:   3'- -GCUGCu---AGAGCuGUGgUUgCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 20974 0.71 0.473588
Target:  5'- -cGCGAgUUCGAUAUCAcccugucCGGCGCCCg -3'
miRNA:   3'- gcUGCUaGAGCUGUGGUu------GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 21564 0.71 0.473588
Target:  5'- aGGCGGUUUUgGACGuuGGuacCGGCGCCCa -3'
miRNA:   3'- gCUGCUAGAG-CUGUggUU---GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 21668 0.7 0.493554
Target:  5'- --uCGG-CUCGACGCCgaagAugGGCGCCg -3'
miRNA:   3'- gcuGCUaGAGCUGUGG----UugCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 23260 0.67 0.673309
Target:  5'- gCGGuacCGcgCUCGccgaccAUACCGugGGCGCCg -3'
miRNA:   3'- -GCU---GCuaGAGC------UGUGGUugCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 23399 0.71 0.425553
Target:  5'- uGACGcgCUCGGCuuucucguugGCCGcgucggUGGCGCCCu -3'
miRNA:   3'- gCUGCuaGAGCUG----------UGGUu-----GCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 23513 0.66 0.715673
Target:  5'- gGAUGGUUccaacccCGGCACgAuCGGUGCCCc -3'
miRNA:   3'- gCUGCUAGa------GCUGUGgUuGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 23788 0.66 0.755768
Target:  5'- cCGGCGGacaUCgaggcagUCGACAUCGAugugaagccCGGCGCgCCg -3'
miRNA:   3'- -GCUGCU---AG-------AGCUGUGGUU---------GCCGCG-GG- -5'
12418 5' -55.7 NC_003324.1 + 23893 0.66 0.750717
Target:  5'- uCGACGAUCgcgucCGcagguuugccguagaGCGCCGACauGGCGUCg -3'
miRNA:   3'- -GCUGCUAGa----GC---------------UGUGGUUG--CCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 24007 0.75 0.286173
Target:  5'- -cGCGugaacCUCGACGCCAuguCGGCGCUCu -3'
miRNA:   3'- gcUGCua---GAGCUGUGGUu--GCCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.