Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12419 | 3' | -54.3 | NC_003324.1 | + | 28538 | 0.66 | 0.768397 |
Target: 5'- -cACUGAGGCCUgCCGcgcucaacaUGGCGGCGu- -3' miRNA: 3'- guUGGCUUUGGA-GGCa--------ACCGCCGUgg -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 37467 | 0.69 | 0.617137 |
Target: 5'- gAGCCGGggUCUCCGggaugGGCGacugguaGCGCUu -3' miRNA: 3'- gUUGGCUuuGGAGGCaa---CCGC-------CGUGG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 49595 | 0.69 | 0.618235 |
Target: 5'- aGGCUGAccaGACCUauggcgauaCCGUcauucUGGCaGGCGCCa -3' miRNA: 3'- gUUGGCU---UUGGA---------GGCA-----ACCG-CCGUGG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 40538 | 0.68 | 0.651179 |
Target: 5'- gCGGCgaGAAGCCUCUGgUGGUuuucgaucGGCACUa -3' miRNA: 3'- -GUUGg-CUUUGGAGGCaACCG--------CCGUGG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 1062 | 0.68 | 0.683965 |
Target: 5'- -uACCGgcACCaagUCC--UGGCGGCugCg -3' miRNA: 3'- guUGGCuuUGG---AGGcaACCGCCGugG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 32298 | 0.67 | 0.705593 |
Target: 5'- gCGACaacGGCCUCUGc--GCGGCGCCg -3' miRNA: 3'- -GUUGgcuUUGGAGGCaacCGCCGUGG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 19284 | 0.67 | 0.73747 |
Target: 5'- -uGCCGAacAACUcCCGgcccuugGGCGGCAUa -3' miRNA: 3'- guUGGCU--UUGGaGGCaa-----CCGCCGUGg -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 54877 | 0.67 | 0.7479 |
Target: 5'- --cCCGGAugCUCgCGaUGuCGGCGCCc -3' miRNA: 3'- guuGGCUUugGAG-GCaACcGCCGUGG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 53643 | 0.67 | 0.758212 |
Target: 5'- cCAAaaGAAcuACCgCCGU--GCGGCACCu -3' miRNA: 3'- -GUUggCUU--UGGaGGCAacCGCCGUGG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 3776 | 0.69 | 0.607265 |
Target: 5'- gAugCGAAGCauCUUCGcUGGCGGUAgCCa -3' miRNA: 3'- gUugGCUUUG--GAGGCaACCGCCGU-GG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 42909 | 0.69 | 0.585398 |
Target: 5'- cCAGCgCGggGCgaCCaUUGGCGGuCACUg -3' miRNA: 3'- -GUUG-GCuuUGgaGGcAACCGCC-GUGG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 43896 | 0.7 | 0.574518 |
Target: 5'- gAGCCGAucccuuguugAGCCUuuGgcGcCGGCACCg -3' miRNA: 3'- gUUGGCU----------UUGGAggCaaCcGCCGUGG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 9296 | 0.86 | 0.058154 |
Target: 5'- -uACCGAGACCUCgucauCGgUGGCGGCACCa -3' miRNA: 3'- guUGGCUUUGGAG-----GCaACCGCCGUGG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 27262 | 0.79 | 0.179481 |
Target: 5'- gCGGCCGAAcacgGCUUCCGcgUUGGUGGCGCg -3' miRNA: 3'- -GUUGGCUU----UGGAGGC--AACCGCCGUGg -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 14810 | 0.74 | 0.365605 |
Target: 5'- gCGGCCGGcaucggcAGCUUCCug-GGCGGCAUCg -3' miRNA: 3'- -GUUGGCU-------UUGGAGGcaaCCGCCGUGG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 21853 | 0.73 | 0.384016 |
Target: 5'- gCAGCCG-GGCCUCCuc-GGCGGCcuugGCCu -3' miRNA: 3'- -GUUGGCuUUGGAGGcaaCCGCCG----UGG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 35654 | 0.72 | 0.430251 |
Target: 5'- uGGCCucGGCCUCCuucUUGGCGGCuuCCu -3' miRNA: 3'- gUUGGcuUUGGAGGc--AACCGCCGu-GG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 21947 | 0.72 | 0.430251 |
Target: 5'- gAugCG-GGCCUCuCGUcGGCGGCGCg -3' miRNA: 3'- gUugGCuUUGGAG-GCAaCCGCCGUGg -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 44322 | 0.71 | 0.479595 |
Target: 5'- gCGGCCGAuAGCCUCUGcagccacGGCGcGCGCUg -3' miRNA: 3'- -GUUGGCU-UUGGAGGCaa-----CCGC-CGUGG- -5' |
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12419 | 3' | -54.3 | NC_003324.1 | + | 18976 | 0.71 | 0.485704 |
Target: 5'- gCGGCCGAAACgaCCGagcgggaaauacGGCGGCugCa -3' miRNA: 3'- -GUUGGCUUUGgaGGCaa----------CCGCCGugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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