miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12419 3' -54.3 NC_003324.1 + 1062 0.68 0.683965
Target:  5'- -uACCGgcACCaagUCC--UGGCGGCugCg -3'
miRNA:   3'- guUGGCuuUGG---AGGcaACCGCCGugG- -5'
12419 3' -54.3 NC_003324.1 + 3776 0.69 0.607265
Target:  5'- gAugCGAAGCauCUUCGcUGGCGGUAgCCa -3'
miRNA:   3'- gUugGCUUUG--GAGGCaACCGCCGU-GG- -5'
12419 3' -54.3 NC_003324.1 + 4932 0.66 0.778441
Target:  5'- uCGACCG--GCCgcaaCGUUGuugcCGGCGCCa -3'
miRNA:   3'- -GUUGGCuuUGGag--GCAACc---GCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 5723 1.12 0.000837
Target:  5'- gCAACCGAAACCUCCGUUGGCGGCACCg -3'
miRNA:   3'- -GUUGGCUUUGGAGGCAACCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 9296 0.86 0.058154
Target:  5'- -uACCGAGACCUCgucauCGgUGGCGGCACCa -3'
miRNA:   3'- guUGGCUUUGGAG-----GCaACCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 14810 0.74 0.365605
Target:  5'- gCGGCCGGcaucggcAGCUUCCug-GGCGGCAUCg -3'
miRNA:   3'- -GUUGGCU-------UUGGAGGcaaCCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 18917 0.7 0.574518
Target:  5'- aGAUCGAGACCggCGUgaUGGagacuGGCGCCg -3'
miRNA:   3'- gUUGGCUUUGGagGCA--ACCg----CCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 18976 0.71 0.485704
Target:  5'- gCGGCCGAAACgaCCGagcgggaaauacGGCGGCugCa -3'
miRNA:   3'- -GUUGGCUUUGgaGGCaa----------CCGCCGugG- -5'
12419 3' -54.3 NC_003324.1 + 19284 0.67 0.73747
Target:  5'- -uGCCGAacAACUcCCGgcccuugGGCGGCAUa -3'
miRNA:   3'- guUGGCU--UUGGaGGCaa-----CCGCCGUGg -5'
12419 3' -54.3 NC_003324.1 + 20707 0.67 0.716305
Target:  5'- aAGCCaaagggcaaGGAGCCUaCCGUcgaagucacUGGCgacGGCGCCa -3'
miRNA:   3'- gUUGG---------CUUUGGA-GGCA---------ACCG---CCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 20787 0.66 0.807625
Target:  5'- -cGCCGGAACgUUgGcgaGGCGGCggACCg -3'
miRNA:   3'- guUGGCUUUGgAGgCaa-CCGCCG--UGG- -5'
12419 3' -54.3 NC_003324.1 + 21853 0.73 0.384016
Target:  5'- gCAGCCG-GGCCUCCuc-GGCGGCcuugGCCu -3'
miRNA:   3'- -GUUGGCuUUGGAGGcaaCCGCCG----UGG- -5'
12419 3' -54.3 NC_003324.1 + 21947 0.72 0.430251
Target:  5'- gAugCG-GGCCUCuCGUcGGCGGCGCg -3'
miRNA:   3'- gUugGCuUUGGAG-GCAaCCGCCGUGg -5'
12419 3' -54.3 NC_003324.1 + 23628 0.66 0.788335
Target:  5'- -cGCCGAGcgcGCCcgCCGccacgcugUGG-GGCACCg -3'
miRNA:   3'- guUGGCUU---UGGa-GGCa-------ACCgCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 25011 0.67 0.758212
Target:  5'- uCGAUCGAGACaCUgCGaccgGGCGGCguGCUg -3'
miRNA:   3'- -GUUGGCUUUG-GAgGCaa--CCGCCG--UGG- -5'
12419 3' -54.3 NC_003324.1 + 26682 0.66 0.778441
Target:  5'- gGAUCGAuGCCgCUGUUGaGCGuGCuACCg -3'
miRNA:   3'- gUUGGCUuUGGaGGCAAC-CGC-CG-UGG- -5'
12419 3' -54.3 NC_003324.1 + 27262 0.79 0.179481
Target:  5'- gCGGCCGAAcacgGCUUCCGcgUUGGUGGCGCg -3'
miRNA:   3'- -GUUGGCUU----UGGAGGC--AACCGCCGUGg -5'
12419 3' -54.3 NC_003324.1 + 27687 0.66 0.768397
Target:  5'- -cGCCGAGcuUCUCC-UUGGCGauguGCGCCu -3'
miRNA:   3'- guUGGCUUu-GGAGGcAACCGC----CGUGG- -5'
12419 3' -54.3 NC_003324.1 + 28497 0.67 0.715238
Target:  5'- aCAGCCGAGACauccccaUCCauccgagcccgcuGUUgGGCGGUAUCc -3'
miRNA:   3'- -GUUGGCUUUGg------AGG-------------CAA-CCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 28538 0.66 0.768397
Target:  5'- -cACUGAGGCCUgCCGcgcucaacaUGGCGGCGu- -3'
miRNA:   3'- guUGGCUUUGGA-GGCa--------ACCGCCGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.