miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12419 3' -54.3 NC_003324.1 + 56207 0.72 0.469498
Target:  5'- gCGGCCGAuGugUUCCGgguUGGCGGCGa- -3'
miRNA:   3'- -GUUGGCU-UugGAGGCa--ACCGCCGUgg -5'
12419 3' -54.3 NC_003324.1 + 54877 0.67 0.7479
Target:  5'- --cCCGGAugCUCgCGaUGuCGGCGCCc -3'
miRNA:   3'- guuGGCUUugGAG-GCaACcGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 53643 0.67 0.758212
Target:  5'- cCAAaaGAAcuACCgCCGU--GCGGCACCu -3'
miRNA:   3'- -GUUggCUU--UGGaGGCAacCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 49595 0.69 0.618235
Target:  5'- aGGCUGAccaGACCUauggcgauaCCGUcauucUGGCaGGCGCCa -3'
miRNA:   3'- gUUGGCU---UUGGA---------GGCA-----ACCG-CCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 49588 0.67 0.713099
Target:  5'- aCGGCCGAGagugccagaaugccGCCcUCGUUGcggacCGGCACCu -3'
miRNA:   3'- -GUUGGCUU--------------UGGaGGCAACc----GCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 45995 0.67 0.716305
Target:  5'- -uGCUuc-GCUUCCGaagcGGCGGCGCCg -3'
miRNA:   3'- guUGGcuuUGGAGGCaa--CCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 44436 0.66 0.798066
Target:  5'- -cGCCGAGACUUCgGUcgcugaUGGcCGGCGu- -3'
miRNA:   3'- guUGGCUUUGGAGgCA------ACC-GCCGUgg -5'
12419 3' -54.3 NC_003324.1 + 44322 0.71 0.479595
Target:  5'- gCGGCCGAuAGCCUCUGcagccacGGCGcGCGCUg -3'
miRNA:   3'- -GUUGGCU-UUGGAGGCaa-----CCGC-CGUGG- -5'
12419 3' -54.3 NC_003324.1 + 43896 0.7 0.574518
Target:  5'- gAGCCGAucccuuguugAGCCUuuGgcGcCGGCACCg -3'
miRNA:   3'- gUUGGCU----------UUGGAggCaaCcGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 42909 0.69 0.585398
Target:  5'- cCAGCgCGggGCgaCCaUUGGCGGuCACUg -3'
miRNA:   3'- -GUUG-GCuuUGgaGGcAACCGCC-GUGG- -5'
12419 3' -54.3 NC_003324.1 + 42389 0.66 0.798066
Target:  5'- -cACCGgcGCCcggCaCGUggcaGGCGGCGCa -3'
miRNA:   3'- guUGGCuuUGGa--G-GCAa---CCGCCGUGg -5'
12419 3' -54.3 NC_003324.1 + 42005 0.67 0.73747
Target:  5'- gAACgCGguACCUCCGgauGCGGCgACUg -3'
miRNA:   3'- gUUG-GCuuUGGAGGCaacCGCCG-UGG- -5'
12419 3' -54.3 NC_003324.1 + 40538 0.68 0.651179
Target:  5'- gCGGCgaGAAGCCUCUGgUGGUuuucgaucGGCACUa -3'
miRNA:   3'- -GUUGg-CUUUGGAGGCaACCG--------CCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 40535 0.69 0.629217
Target:  5'- aAGCgGAGACa-CUGaUGGCGGCACg -3'
miRNA:   3'- gUUGgCUUUGgaGGCaACCGCCGUGg -5'
12419 3' -54.3 NC_003324.1 + 39822 0.68 0.673071
Target:  5'- -cGCCGGAcACCaaggCCGccaugUGGUGGCugCa -3'
miRNA:   3'- guUGGCUU-UGGa---GGCa----ACCGCCGugG- -5'
12419 3' -54.3 NC_003324.1 + 39265 0.67 0.705593
Target:  5'- uGAUCGGuuGCCgCCG-UGGCuGCGCCa -3'
miRNA:   3'- gUUGGCUu-UGGaGGCaACCGcCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 37467 0.69 0.617137
Target:  5'- gAGCCGGggUCUCCGggaugGGCGacugguaGCGCUu -3'
miRNA:   3'- gUUGGCUuuGGAGGCaa---CCGC-------CGUGG- -5'
12419 3' -54.3 NC_003324.1 + 36749 0.69 0.595223
Target:  5'- -uACCGGAcaagacaucucgcAUCUCC---GGCGGCACCu -3'
miRNA:   3'- guUGGCUU-------------UGGAGGcaaCCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 35654 0.72 0.430251
Target:  5'- uGGCCucGGCCUCCuucUUGGCGGCuuCCu -3'
miRNA:   3'- gUUGGcuUUGGAGGc--AACCGCCGu-GG- -5'
12419 3' -54.3 NC_003324.1 + 34068 0.67 0.716305
Target:  5'- cCGACCGAAucgggcuccGCCuuUCCGUcgGGCgGGUGCUu -3'
miRNA:   3'- -GUUGGCUU---------UGG--AGGCAa-CCG-CCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.