miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12419 3' -54.3 NC_003324.1 + 5723 1.12 0.000837
Target:  5'- gCAACCGAAACCUCCGUUGGCGGCACCg -3'
miRNA:   3'- -GUUGGCUUUGGAGGCAACCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 9296 0.86 0.058154
Target:  5'- -uACCGAGACCUCgucauCGgUGGCGGCACCa -3'
miRNA:   3'- guUGGCUUUGGAG-----GCaACCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 27262 0.79 0.179481
Target:  5'- gCGGCCGAAcacgGCUUCCGcgUUGGUGGCGCg -3'
miRNA:   3'- -GUUGGCUU----UGGAGGC--AACCGCCGUGg -5'
12419 3' -54.3 NC_003324.1 + 30483 0.77 0.238986
Target:  5'- cCAAUCgGAAGCCUCCGUauccuggucgagGGCGGCAUg -3'
miRNA:   3'- -GUUGG-CUUUGGAGGCAa-----------CCGCCGUGg -5'
12419 3' -54.3 NC_003324.1 + 14810 0.74 0.365605
Target:  5'- gCGGCCGGcaucggcAGCUUCCug-GGCGGCAUCg -3'
miRNA:   3'- -GUUGGCU-------UUGGAGGcaaCCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 21853 0.73 0.384016
Target:  5'- gCAGCCG-GGCCUCCuc-GGCGGCcuugGCCu -3'
miRNA:   3'- -GUUGGCuUUGGAGGcaaCCGCCG----UGG- -5'
12419 3' -54.3 NC_003324.1 + 21947 0.72 0.430251
Target:  5'- gAugCG-GGCCUCuCGUcGGCGGCGCg -3'
miRNA:   3'- gUugGCuUUGGAG-GCAaCCGCCGUGg -5'
12419 3' -54.3 NC_003324.1 + 35654 0.72 0.430251
Target:  5'- uGGCCucGGCCUCCuucUUGGCGGCuuCCu -3'
miRNA:   3'- gUUGGcuUUGGAGGc--AACCGCCGu-GG- -5'
12419 3' -54.3 NC_003324.1 + 56207 0.72 0.469498
Target:  5'- gCGGCCGAuGugUUCCGgguUGGCGGCGa- -3'
miRNA:   3'- -GUUGGCU-UugGAGGCa--ACCGCCGUgg -5'
12419 3' -54.3 NC_003324.1 + 44322 0.71 0.479595
Target:  5'- gCGGCCGAuAGCCUCUGcagccacGGCGcGCGCUg -3'
miRNA:   3'- -GUUGGCU-UUGGAGGCaa-----CCGC-CGUGG- -5'
12419 3' -54.3 NC_003324.1 + 18976 0.71 0.485704
Target:  5'- gCGGCCGAAACgaCCGagcgggaaauacGGCGGCugCa -3'
miRNA:   3'- -GUUGGCUUUGgaGGCaa----------CCGCCGugG- -5'
12419 3' -54.3 NC_003324.1 + 43896 0.7 0.574518
Target:  5'- gAGCCGAucccuuguugAGCCUuuGgcGcCGGCACCg -3'
miRNA:   3'- gUUGGCU----------UUGGAggCaaCcGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 18917 0.7 0.574518
Target:  5'- aGAUCGAGACCggCGUgaUGGagacuGGCGCCg -3'
miRNA:   3'- gUUGGCUUUGGagGCA--ACCg----CCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 42909 0.69 0.585398
Target:  5'- cCAGCgCGggGCgaCCaUUGGCGGuCACUg -3'
miRNA:   3'- -GUUG-GCuuUGgaGGcAACCGCC-GUGG- -5'
12419 3' -54.3 NC_003324.1 + 36749 0.69 0.595223
Target:  5'- -uACCGGAcaagacaucucgcAUCUCC---GGCGGCACCu -3'
miRNA:   3'- guUGGCUU-------------UGGAGGcaaCCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 3776 0.69 0.607265
Target:  5'- gAugCGAAGCauCUUCGcUGGCGGUAgCCa -3'
miRNA:   3'- gUugGCUUUG--GAGGCaACCGCCGU-GG- -5'
12419 3' -54.3 NC_003324.1 + 37467 0.69 0.617137
Target:  5'- gAGCCGGggUCUCCGggaugGGCGacugguaGCGCUu -3'
miRNA:   3'- gUUGGCUuuGGAGGCaa---CCGC-------CGUGG- -5'
12419 3' -54.3 NC_003324.1 + 49595 0.69 0.618235
Target:  5'- aGGCUGAccaGACCUauggcgauaCCGUcauucUGGCaGGCGCCa -3'
miRNA:   3'- gUUGGCU---UUGGA---------GGCA-----ACCG-CCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 40535 0.69 0.629217
Target:  5'- aAGCgGAGACa-CUGaUGGCGGCACg -3'
miRNA:   3'- gUUGgCUUUGgaGGCaACCGCCGUGg -5'
12419 3' -54.3 NC_003324.1 + 30563 0.69 0.629217
Target:  5'- --uCCGAgGGCCUgCuc-GGCGGCGCCg -3'
miRNA:   3'- guuGGCU-UUGGAgGcaaCCGCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.