miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12421 3' -55.5 NC_003324.1 + 39376 0.66 0.674751
Target:  5'- cAUC--CGGCGAaGCAgcuuGCGCUGCGGCUc -3'
miRNA:   3'- -UAGcuGCCGUUcCGU----UGUGACGUCGA- -5'
12421 3' -55.5 NC_003324.1 + 3165 0.66 0.663602
Target:  5'- cUCGaAUGGCAAGaGCGggaGCGCcgUGCGGCc -3'
miRNA:   3'- uAGC-UGCCGUUC-CGU---UGUG--ACGUCGa -5'
12421 3' -55.5 NC_003324.1 + 7543 0.66 0.652422
Target:  5'- gGUCGGgauuuUGGCucucGGGCAGCACagcacucggGCAGCa -3'
miRNA:   3'- -UAGCU-----GCCGu---UCCGUUGUGa--------CGUCGa -5'
12421 3' -55.5 NC_003324.1 + 47834 0.66 0.652422
Target:  5'- -cUGACGcCuuauGAGGCGGCGCUGCcGCUg -3'
miRNA:   3'- uaGCUGCcG----UUCCGUUGUGACGuCGA- -5'
12421 3' -55.5 NC_003324.1 + 26922 0.66 0.651303
Target:  5'- -aUGGCGGCGaucgacgAGGCAcucaGCGgaGCGGCg -3'
miRNA:   3'- uaGCUGCCGU-------UCCGU----UGUgaCGUCGa -5'
12421 3' -55.5 NC_003324.1 + 22593 0.66 0.641223
Target:  5'- gAUCGGCGGCcuuuuGGCuGC-CUGCcGCg -3'
miRNA:   3'- -UAGCUGCCGuu---CCGuUGuGACGuCGa -5'
12421 3' -55.5 NC_003324.1 + 31247 0.66 0.634498
Target:  5'- -cUGAUGGCGcaggccGGGCAGCuccgcgaggcaggcCUGCAGCg -3'
miRNA:   3'- uaGCUGCCGU------UCCGUUGu-------------GACGUCGa -5'
12421 3' -55.5 NC_003324.1 + 18713 0.67 0.62329
Target:  5'- cAUCGACu-CGAGGUAACGCUGCcauaccugauccaucAGCUc -3'
miRNA:   3'- -UAGCUGccGUUCCGUUGUGACG---------------UCGA- -5'
12421 3' -55.5 NC_003324.1 + 30363 0.67 0.618808
Target:  5'- uUCGGCGGCuuGGGCGACcgUGCcuuGGCc -3'
miRNA:   3'- uAGCUGCCGu-UCCGUUGugACG---UCGa -5'
12421 3' -55.5 NC_003324.1 + 18518 0.67 0.607614
Target:  5'- -cCGGCGGCAAGGUcGCGCagaccagacCAGCg -3'
miRNA:   3'- uaGCUGCCGUUCCGuUGUGac-------GUCGa -5'
12421 3' -55.5 NC_003324.1 + 14598 0.67 0.607614
Target:  5'- -cCGGCGGCGcAGGCGguaGCgugGCGGCc -3'
miRNA:   3'- uaGCUGCCGU-UCCGUug-UGa--CGUCGa -5'
12421 3' -55.5 NC_003324.1 + 38845 0.67 0.574202
Target:  5'- cGUCGGCGucccaccagcucGCGaaaugcAGGCGAUACUGCAgGCg -3'
miRNA:   3'- -UAGCUGC------------CGU------UCCGUUGUGACGU-CGa -5'
12421 3' -55.5 NC_003324.1 + 48575 0.67 0.574202
Target:  5'- -aUGAgGGCAAGGaCAGCGgCgucGCAGCg -3'
miRNA:   3'- uaGCUgCCGUUCC-GUUGU-Ga--CGUCGa -5'
12421 3' -55.5 NC_003324.1 + 36503 0.67 0.574202
Target:  5'- -aUGGCGGUAGGGCGACGgcGaCAGCc -3'
miRNA:   3'- uaGCUGCCGUUCCGUUGUgaC-GUCGa -5'
12421 3' -55.5 NC_003324.1 + 47652 0.67 0.573094
Target:  5'- cUCGACGGCGAGGgucgaucggcccuCGucauccaccaugGCACUGCcGCa -3'
miRNA:   3'- uAGCUGCCGUUCC-------------GU------------UGUGACGuCGa -5'
12421 3' -55.5 NC_003324.1 + 42201 0.67 0.563151
Target:  5'- -gCGGCGGCAuuGGCGACGagUGCgaAGCg -3'
miRNA:   3'- uaGCUGCCGUu-CCGUUGUg-ACG--UCGa -5'
12421 3' -55.5 NC_003324.1 + 33049 0.68 0.530376
Target:  5'- -gCGACGGCGA-GCAGa--UGCAGCg -3'
miRNA:   3'- uaGCUGCCGUUcCGUUgugACGUCGa -5'
12421 3' -55.5 NC_003324.1 + 26720 0.68 0.519603
Target:  5'- -gCGACGcaGCAGGGCGcggGCcuuuuCUGCAGCa -3'
miRNA:   3'- uaGCUGC--CGUUCCGU---UGu----GACGUCGa -5'
12421 3' -55.5 NC_003324.1 + 35484 0.68 0.504668
Target:  5'- -cCGAgGGCGaggaaaccaugcgcGGGCGGCcgagcagGCUGCAGCa -3'
miRNA:   3'- uaGCUgCCGU--------------UCCGUUG-------UGACGUCGa -5'
12421 3' -55.5 NC_003324.1 + 57380 0.69 0.498324
Target:  5'- cUCGGCGGaggcgAGGGCGGCACgacCGGCg -3'
miRNA:   3'- uAGCUGCCg----UUCCGUUGUGac-GUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.