miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12422 5' -57.1 NC_003324.1 + 20785 0.74 0.248936
Target:  5'- --aCCGCCGGAAcguuGGCGAgGCGGCGGa -3'
miRNA:   3'- gacGGUGGUCUUc---CUGCUgUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 22305 0.71 0.366731
Target:  5'- uUGCCGCUcccGAAGGu--GCGCGGCGGc -3'
miRNA:   3'- gACGGUGGu--CUUCCugcUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 22787 0.67 0.601917
Target:  5'- -cGCCACUucguGAGcuGGGCGACGuuGCGGc -3'
miRNA:   3'- gaCGGUGGu---CUU--CCUGCUGUgcCGCC- -5'
12422 5' -57.1 NC_003324.1 + 23025 0.66 0.655608
Target:  5'- -cGCCACCGGA--GACuggGACGCGGUu- -3'
miRNA:   3'- gaCGGUGGUCUucCUG---CUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 24259 0.68 0.52798
Target:  5'- uCUGCUgAUCAGAGGccuucucgucGAUcugGGCACGGCGGa -3'
miRNA:   3'- -GACGG-UGGUCUUC----------CUG---CUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 25529 0.66 0.634128
Target:  5'- aUGCuCGCCaAGuGGGuCGGCugGgGCGGc -3'
miRNA:   3'- gACG-GUGG-UCuUCCuGCUGugC-CGCC- -5'
12422 5' -57.1 NC_003324.1 + 26225 0.7 0.419807
Target:  5'- -gGCCGCCAGcagcGGGACGAgaACGGuCGa -3'
miRNA:   3'- gaCGGUGGUCu---UCCUGCUg-UGCC-GCc -5'
12422 5' -57.1 NC_003324.1 + 28687 0.69 0.45767
Target:  5'- -gGCCAC---GAGGGCGACAgcgGGCGGa -3'
miRNA:   3'- gaCGGUGgucUUCCUGCUGUg--CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 29871 0.71 0.383902
Target:  5'- gUGaCAUCAGGcaGGGugGAUACGGCGc -3'
miRNA:   3'- gACgGUGGUCU--UCCugCUGUGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 29911 0.7 0.429096
Target:  5'- gCUGCUgGCCAuGcuGGACGGCGCGGCc- -3'
miRNA:   3'- -GACGG-UGGU-CuuCCUGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 30078 0.66 0.644874
Target:  5'- -cGUCGCCAGAgugcaccggccGGGAuCGAUGCGGaccCGGc -3'
miRNA:   3'- gaCGGUGGUCU-----------UCCU-GCUGUGCC---GCC- -5'
12422 5' -57.1 NC_003324.1 + 30741 0.68 0.52798
Target:  5'- cCUGCUGCuCGGGAGuGACGgaaGCACGggcGCGGu -3'
miRNA:   3'- -GACGGUG-GUCUUC-CUGC---UGUGC---CGCC- -5'
12422 5' -57.1 NC_003324.1 + 31318 0.66 0.644874
Target:  5'- gUGCgGCCGGcGGcGCuGGCGCuGGCGGg -3'
miRNA:   3'- gACGgUGGUCuUCcUG-CUGUG-CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 31771 0.67 0.566748
Target:  5'- -cGUCACCAGcacGGGGauGCGGCcgaucucggauggaACGGCGGc -3'
miRNA:   3'- gaCGGUGGUC---UUCC--UGCUG--------------UGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 32415 0.68 0.538369
Target:  5'- aUGCCGCUAGGcaggccaugcAGGAUccggaGAUGCGGCGc -3'
miRNA:   3'- gACGGUGGUCU----------UCCUG-----CUGUGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 35161 0.75 0.213557
Target:  5'- aUGCCACCGGAGauacGGGCGACAauGCa- -3'
miRNA:   3'- gACGGUGGUCUU----CCUGCUGUgcCGcc -5'
12422 5' -57.1 NC_003324.1 + 36416 0.66 0.644874
Target:  5'- -aGUCAUUAuGGAcGAUGGCGCGGUGGa -3'
miRNA:   3'- gaCGGUGGU-CUUcCUGCUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 37246 0.73 0.261763
Target:  5'- cCUGCCGCggcgcaAGGAaGACGACAagcCGGCGGg -3'
miRNA:   3'- -GACGGUGg-----UCUUcCUGCUGU---GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 38264 0.69 0.44803
Target:  5'- -cGCCAUCAGGucGGGAguGCGCGGCa- -3'
miRNA:   3'- gaCGGUGGUCU--UCCUgcUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 39591 0.68 0.52798
Target:  5'- -aGCCuCCGGAucGuccuCGACAgGGCGGa -3'
miRNA:   3'- gaCGGuGGUCUucCu---GCUGUgCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.