miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12422 5' -57.1 NC_003324.1 + 19846 0.67 0.55935
Target:  5'- aUGCCGCCGG-GGGACGcgaACAgacCGGCc- -3'
miRNA:   3'- gACGGUGGUCuUCCUGC---UGU---GCCGcc -5'
12422 5' -57.1 NC_003324.1 + 46440 0.71 0.339573
Target:  5'- cCUGCuUACCgcuuuccaacugagAGAcGGACGACACGGCa- -3'
miRNA:   3'- -GACG-GUGG--------------UCUuCCUGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 26225 0.7 0.419807
Target:  5'- -gGCCGCCAGcagcGGGACGAgaACGGuCGa -3'
miRNA:   3'- gaCGGUGGUCu---UCCUGCUg-UGCC-GCc -5'
12422 5' -57.1 NC_003324.1 + 1574 0.67 0.55935
Target:  5'- -gGCCcgGCCGGAAGcaaugccauaGACGAagAUGGCGGa -3'
miRNA:   3'- gaCGG--UGGUCUUC----------CUGCUg-UGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 35161 0.75 0.213557
Target:  5'- aUGCCACCGGAGauacGGGCGACAauGCa- -3'
miRNA:   3'- gACGGUGGUCUU----CCUGCUGUgcCGcc -5'
12422 5' -57.1 NC_003324.1 + 31771 0.67 0.566748
Target:  5'- -cGUCACCAGcacGGGGauGCGGCcgaucucggauggaACGGCGGc -3'
miRNA:   3'- gaCGGUGGUC---UUCC--UGCUG--------------UGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 40547 0.67 0.569927
Target:  5'- gCUGCUucCCAGAAGcGGaGACACugauGGCGGc -3'
miRNA:   3'- -GACGGu-GGUCUUC-CUgCUGUG----CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 42891 0.7 0.401599
Target:  5'- uCUGCgACCgAGAacgacccagcgcGGGGCGACcauUGGCGGu -3'
miRNA:   3'- -GACGgUGG-UCU------------UCCUGCUGu--GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 44811 0.66 0.677005
Target:  5'- gCUGCUGCgGGGagaagGGGGCGGCGucauUGGCGu -3'
miRNA:   3'- -GACGGUGgUCU-----UCCUGCUGU----GCCGCc -5'
12422 5' -57.1 NC_003324.1 + 45831 0.66 0.655608
Target:  5'- gCUGCgGCgAGAacagugAGGugGAaACGGCGcGg -3'
miRNA:   3'- -GACGgUGgUCU------UCCugCUgUGCCGC-C- -5'
12422 5' -57.1 NC_003324.1 + 16805 0.69 0.487232
Target:  5'- -gGCCAgCAGGGuGACGGCAagcaucaaGGCGGc -3'
miRNA:   3'- gaCGGUgGUCUUcCUGCUGUg-------CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 18453 0.69 0.486232
Target:  5'- uUGCCGCCGGucGGGuucaugacccaauCGugACGGCu- -3'
miRNA:   3'- gACGGUGGUCuuCCU-------------GCugUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 45959 0.69 0.477275
Target:  5'- -aGCCuCCGGGAGGAgcUGAUuACGGgGGa -3'
miRNA:   3'- gaCGGuGGUCUUCCU--GCUG-UGCCgCC- -5'
12422 5' -57.1 NC_003324.1 + 50284 0.69 0.44803
Target:  5'- -cGCCGCCGGuc-GACGGCAagaaGGCGu -3'
miRNA:   3'- gaCGGUGGUCuucCUGCUGUg---CCGCc -5'
12422 5' -57.1 NC_003324.1 + 14809 0.7 0.398912
Target:  5'- -cGCgGCCGGcaucggcagcuuccuGGGCGGCAuCGGCGGa -3'
miRNA:   3'- gaCGgUGGUCuu-------------CCUGCUGU-GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 9485 0.66 0.622306
Target:  5'- -cGCUACCuGAAgaaugguGGcACGGC-CGGCGGc -3'
miRNA:   3'- gaCGGUGGuCUU-------CC-UGCUGuGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 14581 0.66 0.623381
Target:  5'- cCUGCCGgCGcAAGcggccGGCGGCGCaGGCGGu -3'
miRNA:   3'- -GACGGUgGUcUUC-----CUGCUGUG-CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 51491 0.66 0.633053
Target:  5'- aUGCCcaccaaguuucguACCGGGcagacgAGGACGAaCAUGGCcGGu -3'
miRNA:   3'- gACGG-------------UGGUCU------UCCUGCU-GUGCCG-CC- -5'
12422 5' -57.1 NC_003324.1 + 5058 0.66 0.634128
Target:  5'- -cGCCGCCA--AGGACccgaACGCGGCc- -3'
miRNA:   3'- gaCGGUGGUcuUCCUGc---UGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 52288 0.66 0.644874
Target:  5'- uCUaCCGCCcGAuucGGGGCGGC-CGGCGu -3'
miRNA:   3'- -GAcGGUGGuCU---UCCUGCUGuGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.