miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12422 5' -57.1 NC_003324.1 + 38264 0.69 0.44803
Target:  5'- -cGCCAUCAGGucGGGAguGCGCGGCa- -3'
miRNA:   3'- gaCGGUGGUCU--UCCUgcUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 50284 0.69 0.44803
Target:  5'- -cGCCGCCGGuc-GACGGCAagaaGGCGu -3'
miRNA:   3'- gaCGGUGGUCuucCUGCUGUg---CCGCc -5'
12422 5' -57.1 NC_003324.1 + 45959 0.69 0.477275
Target:  5'- -aGCCuCCGGGAGGAgcUGAUuACGGgGGa -3'
miRNA:   3'- gaCGGuGGUCUUCCU--GCUG-UGCCgCC- -5'
12422 5' -57.1 NC_003324.1 + 18453 0.69 0.486232
Target:  5'- uUGCCGCCGGucGGGuucaugacccaauCGugACGGCu- -3'
miRNA:   3'- gACGGUGGUCuuCCU-------------GCugUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 16805 0.69 0.487232
Target:  5'- -gGCCAgCAGGGuGACGGCAagcaucaaGGCGGc -3'
miRNA:   3'- gaCGGUgGUCUUcCUGCUGUg-------CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 6845 1.09 0.00076
Target:  5'- gCUGCCACCAGAAGGACGACACGGCGGc -3'
miRNA:   3'- -GACGGUGGUCUUCCUGCUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 30741 0.68 0.52798
Target:  5'- cCUGCUGCuCGGGAGuGACGgaaGCACGggcGCGGu -3'
miRNA:   3'- -GACGGUG-GUCUUC-CUGC---UGUGC---CGCC- -5'
12422 5' -57.1 NC_003324.1 + 39591 0.68 0.52798
Target:  5'- -aGCCuCCGGAucGuccuCGACAgGGCGGa -3'
miRNA:   3'- gaCGGuGGUCUucCu---GCUGUgCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 47811 0.68 0.54778
Target:  5'- --cCCGCCGGAAGGAagacgaauaccUGACGCcuuaugaGGCGGc -3'
miRNA:   3'- gacGGUGGUCUUCCU-----------GCUGUG-------CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 2530 0.68 0.548828
Target:  5'- -cGCCACCGacgaacaggcGAcGGACGGCagACGGCa- -3'
miRNA:   3'- gaCGGUGGU----------CUuCCUGCUG--UGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 10847 0.67 0.580552
Target:  5'- gUGCUuCCGGuGAGGAaGACuuGGCGGu -3'
miRNA:   3'- gACGGuGGUC-UUCCUgCUGugCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 22787 0.67 0.601917
Target:  5'- -cGCCACUucguGAGcuGGGCGACGuuGCGGc -3'
miRNA:   3'- gaCGGUGGu---CUU--CCUGCUGUgcCGCC- -5'
12422 5' -57.1 NC_003324.1 + 2686 0.67 0.612641
Target:  5'- -gGCCGCUucGGcAAGGgcACGAUgucgGCGGCGGc -3'
miRNA:   3'- gaCGGUGG--UC-UUCC--UGCUG----UGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 9485 0.66 0.622306
Target:  5'- -cGCUACCuGAAgaaugguGGcACGGC-CGGCGGc -3'
miRNA:   3'- gaCGGUGGuCUU-------CC-UGCUGuGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 14581 0.66 0.623381
Target:  5'- cCUGCCGgCGcAAGcggccGGCGGCGCaGGCGGu -3'
miRNA:   3'- -GACGGUgGUcUUC-----CUGCUGUG-CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 51491 0.66 0.633053
Target:  5'- aUGCCcaccaaguuucguACCGGGcagacgAGGACGAaCAUGGCcGGu -3'
miRNA:   3'- gACGG-------------UGGUCU------UCCUGCU-GUGCCG-CC- -5'
12422 5' -57.1 NC_003324.1 + 5058 0.66 0.634128
Target:  5'- -cGCCGCCA--AGGACccgaACGCGGCc- -3'
miRNA:   3'- gaCGGUGGUcuUCCUGc---UGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 52288 0.66 0.644874
Target:  5'- uCUaCCGCCcGAuucGGGGCGGC-CGGCGu -3'
miRNA:   3'- -GAcGGUGGuCU---UCCUGCUGuGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 45831 0.66 0.655608
Target:  5'- gCUGCgGCgAGAacagugAGGugGAaACGGCGcGg -3'
miRNA:   3'- -GACGgUGgUCU------UCCugCUgUGCCGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.