Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 41440 | 0.67 | 0.518858 |
Target: 5'- cGGCuacuucauuaAGCCG-CCCCCAG-CGCCgAuuuCGa -3' miRNA: 3'- -CCG----------UUGGCaGGGGGUCaGCGGgUu--GC- -5' |
|||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 2626 | 0.67 | 0.52906 |
Target: 5'- cGGCGuGCCGUCUgCCGuccGUCGCCUguucgucgguGGCGu -3' miRNA: 3'- -CCGU-UGGCAGGgGGU---CAGCGGG----------UUGC- -5' |
|||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 32896 | 0.66 | 0.56008 |
Target: 5'- aGGCGGCUG-CCCgCCAugCGCCgAACa -3' miRNA: 3'- -CCGUUGGCaGGG-GGUcaGCGGgUUGc -5' |
|||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 7345 | 0.66 | 0.570536 |
Target: 5'- aGCGACCGUgaUCUCGGUCGaaguuuCCCAGCc -3' miRNA: 3'- cCGUUGGCAg-GGGGUCAGC------GGGUUGc -5' |
|||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 8168 | 0.66 | 0.576833 |
Target: 5'- cGGCGACCGUggcagccauggucaCCUCCucgacgaAGUUGCCCu-CGu -3' miRNA: 3'- -CCGUUGGCA--------------GGGGG-------UCAGCGGGuuGC- -5' |
|||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 35883 | 0.66 | 0.581039 |
Target: 5'- uGGCu-CCGgucaaCCCCCAGaUCGCCau-CGc -3' miRNA: 3'- -CCGuuGGCa----GGGGGUC-AGCGGguuGC- -5' |
|||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 35556 | 0.71 | 0.313793 |
Target: 5'- cGGCGaucGCCGUCCCCaCGcUCGCCgacaucgcCGACGu -3' miRNA: 3'- -CCGU---UGGCAGGGG-GUcAGCGG--------GUUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home