miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12431 3' -61.6 NC_003324.1 + 13096 1.09 0.000298
Target:  5'- cCGCCGCCGACGCAGCCUCGCUGACGGu -3'
miRNA:   3'- -GCGGCGGCUGCGUCGGAGCGACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 19458 0.78 0.068002
Target:  5'- aCGCgCGCCGGCGUcgauCCaUCGCUGACGGa -3'
miRNA:   3'- -GCG-GCGGCUGCGuc--GG-AGCGACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 23632 0.77 0.082276
Target:  5'- cCGUCGCCGAgCGCGcccGCCgccaCGCUGugGGg -3'
miRNA:   3'- -GCGGCGGCU-GCGU---CGGa---GCGACugCC- -5'
12431 3' -61.6 NC_003324.1 + 31339 0.75 0.102085
Target:  5'- uCGCCGCCGcaaaaacgcgcaGUGCGGCCggcggcgcuggCGCUGGCGGg -3'
miRNA:   3'- -GCGGCGGC------------UGCGUCGGa----------GCGACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 2507 0.75 0.104857
Target:  5'- aGCCGCCGGCGUcggcGGCUUCaucaucggcGUUGGCGGu -3'
miRNA:   3'- gCGGCGGCUGCG----UCGGAG---------CGACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 56572 0.74 0.123027
Target:  5'- uGCCGCCGcccauaACGCcGCUaUCGCUGACGa -3'
miRNA:   3'- gCGGCGGC------UGCGuCGG-AGCGACUGCc -5'
12431 3' -61.6 NC_003324.1 + 14579 0.74 0.133173
Target:  5'- gGCCuGCCGGCGCaagcGGCCggcggCGCaGGCGGu -3'
miRNA:   3'- gCGG-CGGCUGCG----UCGGa----GCGaCUGCC- -5'
12431 3' -61.6 NC_003324.1 + 10272 0.73 0.155806
Target:  5'- uGgCGCCGAUGagcacUAGCCgaaGCUGACGGg -3'
miRNA:   3'- gCgGCGGCUGC-----GUCGGag-CGACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 49246 0.73 0.164094
Target:  5'- gGCUGUCGAUGguGCCUuCGgUGGCGa -3'
miRNA:   3'- gCGGCGGCUGCguCGGA-GCgACUGCc -5'
12431 3' -61.6 NC_003324.1 + 21188 0.72 0.171449
Target:  5'- gCGCCagcccgacguggaaGCCGACGCAGCacgCGCcgcGGCGGc -3'
miRNA:   3'- -GCGG--------------CGGCUGCGUCGga-GCGa--CUGCC- -5'
12431 3' -61.6 NC_003324.1 + 20244 0.72 0.17727
Target:  5'- gGCUGCCGGCaGCguucuggaucgAGCCUCGaUUGAUGGc -3'
miRNA:   3'- gCGGCGGCUG-CG-----------UCGGAGC-GACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 16233 0.72 0.191377
Target:  5'- gGCCguGCCGACGCGGCCagCGCagGGCc- -3'
miRNA:   3'- gCGG--CGGCUGCGUCGGa-GCGa-CUGcc -5'
12431 3' -61.6 NC_003324.1 + 18250 0.71 0.211711
Target:  5'- uGCCaUCGACGacagAGCCgcgacCGCUGACGGa -3'
miRNA:   3'- gCGGcGGCUGCg---UCGGa----GCGACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 28946 0.71 0.222559
Target:  5'- uGCCGCCuGGCGCugcuugagcaAGCgCUCGUUGACc- -3'
miRNA:   3'- gCGGCGG-CUGCG----------UCG-GAGCGACUGcc -5'
12431 3' -61.6 NC_003324.1 + 22143 0.71 0.222559
Target:  5'- uGCCGUCGuCGUccGCCUCGCcGACGc -3'
miRNA:   3'- gCGGCGGCuGCGu-CGGAGCGaCUGCc -5'
12431 3' -61.6 NC_003324.1 + 20615 0.7 0.228159
Target:  5'- uGuuGCCGGCGCugaugGGCgCUUGCggucGGCGGg -3'
miRNA:   3'- gCggCGGCUGCG-----UCG-GAGCGa---CUGCC- -5'
12431 3' -61.6 NC_003324.1 + 14808 0.7 0.233877
Target:  5'- aCGCgGCCGGCaucgGCAGCUUC-CUGgGCGGc -3'
miRNA:   3'- -GCGgCGGCUG----CGUCGGAGcGAC-UGCC- -5'
12431 3' -61.6 NC_003324.1 + 14833 0.7 0.233877
Target:  5'- aGCCGUCGAgcUGCAGCCcauaUUGCUGAUu- -3'
miRNA:   3'- gCGGCGGCU--GCGUCGG----AGCGACUGcc -5'
12431 3' -61.6 NC_003324.1 + 42566 0.7 0.239126
Target:  5'- uGCCGCaauGACcgugccgGCAGCCUCGCUGuaGGc -3'
miRNA:   3'- gCGGCGg--CUG-------CGUCGGAGCGACugCC- -5'
12431 3' -61.6 NC_003324.1 + 2922 0.7 0.239715
Target:  5'- gGCCGuuGACGCucccCCUCGCccGGCGa -3'
miRNA:   3'- gCGGCggCUGCGuc--GGAGCGa-CUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.