miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12431 3' -61.6 NC_003324.1 + 1592 0.67 0.374553
Target:  5'- uGCCGCCGGau---CCUCGCUGGCc- -3'
miRNA:   3'- gCGGCGGCUgcgucGGAGCGACUGcc -5'
12431 3' -61.6 NC_003324.1 + 1743 0.66 0.407894
Target:  5'- cCGCCGUCaGCGuCAGCaggCGCaggccgaguuucgUGACGGg -3'
miRNA:   3'- -GCGGCGGcUGC-GUCGga-GCG-------------ACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 2412 0.67 0.374553
Target:  5'- cCGCCaacGCCGAUGaugaAGCCgccgaCGCcGGCGGc -3'
miRNA:   3'- -GCGG---CGGCUGCg---UCGGa----GCGaCUGCC- -5'
12431 3' -61.6 NC_003324.1 + 2507 0.75 0.104857
Target:  5'- aGCCGCCGGCGUcggcGGCUUCaucaucggcGUUGGCGGu -3'
miRNA:   3'- gCGGCGGCUGCG----UCGGAG---------CGACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 2760 0.66 0.408773
Target:  5'- uGCCcuuGCCGAaGCGGCCaccgCGCUGgaaGGg -3'
miRNA:   3'- gCGG---CGGCUgCGUCGGa---GCGACug-CC- -5'
12431 3' -61.6 NC_003324.1 + 2922 0.7 0.239715
Target:  5'- gGCCGuuGACGCucccCCUCGCccGGCGa -3'
miRNA:   3'- gCGGCggCUGCGuc--GGAGCGa-CUGCc -5'
12431 3' -61.6 NC_003324.1 + 4987 0.69 0.297836
Target:  5'- aGCCGCCuGCGgAGCCgaaagCGauaacgccagcCUGACGGc -3'
miRNA:   3'- gCGGCGGcUGCgUCGGa----GC-----------GACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 5057 0.66 0.435682
Target:  5'- cCGCCGCCaaggacccgaACGCGGCCUgauaGCUuaaGCGGc -3'
miRNA:   3'- -GCGGCGGc---------UGCGUCGGAg---CGAc--UGCC- -5'
12431 3' -61.6 NC_003324.1 + 6169 0.66 0.453245
Target:  5'- gCGCUGCCcgacgacaugcgaGAgGCAGcCCUUGCUG-CGa -3'
miRNA:   3'- -GCGGCGG-------------CUgCGUC-GGAGCGACuGCc -5'
12431 3' -61.6 NC_003324.1 + 6303 0.66 0.435682
Target:  5'- gCGCUGCUGcuGCGCcucGGCCUUcaugGCUucGACGGu -3'
miRNA:   3'- -GCGGCGGC--UGCG---UCGGAG----CGA--CUGCC- -5'
12431 3' -61.6 NC_003324.1 + 8243 0.66 0.45418
Target:  5'- aCGaaGCUGACGCGGCgUUUGcCUGcgaGCGGg -3'
miRNA:   3'- -GCggCGGCUGCGUCG-GAGC-GAC---UGCC- -5'
12431 3' -61.6 NC_003324.1 + 9734 0.7 0.245674
Target:  5'- aCGCCGCCcaGCGCguuGGCgUUGCcGGCGGu -3'
miRNA:   3'- -GCGGCGGc-UGCG---UCGgAGCGaCUGCC- -5'
12431 3' -61.6 NC_003324.1 + 10272 0.73 0.155806
Target:  5'- uGgCGCCGAUGagcacUAGCCgaaGCUGACGGg -3'
miRNA:   3'- gCgGCGGCUGC-----GUCGGag-CGACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 12427 0.67 0.400036
Target:  5'- uGCUGCCGAgCGCGGCaaUGCcGACa- -3'
miRNA:   3'- gCGGCGGCU-GCGUCGgaGCGaCUGcc -5'
12431 3' -61.6 NC_003324.1 + 13096 1.09 0.000298
Target:  5'- cCGCCGCCGACGCAGCCUCGCUGACGGu -3'
miRNA:   3'- -GCGGCGGCUGCGUCGGAGCGACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 14445 0.68 0.31215
Target:  5'- gCGCCcauGCCGGCGUccaagcaucggcGGaCCUUGCUGGCa- -3'
miRNA:   3'- -GCGG---CGGCUGCG------------UC-GGAGCGACUGcc -5'
12431 3' -61.6 NC_003324.1 + 14579 0.74 0.133173
Target:  5'- gGCCuGCCGGCGCaagcGGCCggcggCGCaGGCGGu -3'
miRNA:   3'- gCGG-CGGCUGCG----UCGGa----GCGaCUGCC- -5'
12431 3' -61.6 NC_003324.1 + 14682 0.66 0.444877
Target:  5'- gGCCGCC-ACGCuaccGCCUgCGCcGcCGGc -3'
miRNA:   3'- gCGGCGGcUGCGu---CGGA-GCGaCuGCC- -5'
12431 3' -61.6 NC_003324.1 + 14808 0.7 0.233877
Target:  5'- aCGCgGCCGGCaucgGCAGCUUC-CUGgGCGGc -3'
miRNA:   3'- -GCGgCGGCUG----CGUCGGAGcGAC-UGCC- -5'
12431 3' -61.6 NC_003324.1 + 14833 0.7 0.233877
Target:  5'- aGCCGUCGAgcUGCAGCCcauaUUGCUGAUu- -3'
miRNA:   3'- gCGGCGGCU--GCGUCGG----AGCGACUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.