miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12431 3' -61.6 NC_003324.1 + 19538 0.67 0.400036
Target:  5'- aGCCGCUucacGCGCAuauaCUCGCcGACGGc -3'
miRNA:   3'- gCGGCGGc---UGCGUcg--GAGCGaCUGCC- -5'
12431 3' -61.6 NC_003324.1 + 35397 0.69 0.297836
Target:  5'- gGCCGCCGcGCGCAugguuuccucGcCCUCGgUG-CGGg -3'
miRNA:   3'- gCGGCGGC-UGCGU----------C-GGAGCgACuGCC- -5'
12431 3' -61.6 NC_003324.1 + 14445 0.68 0.31215
Target:  5'- gCGCCcauGCCGGCGUccaagcaucggcGGaCCUUGCUGGCa- -3'
miRNA:   3'- -GCGG---CGGCUGCG------------UC-GGAGCGACUGcc -5'
12431 3' -61.6 NC_003324.1 + 26154 0.67 0.355775
Target:  5'- cCGCUGCUGGCggccuGCaucauucugucggcGGUCUCGCUG-CGGg -3'
miRNA:   3'- -GCGGCGGCUG-----CG--------------UCGGAGCGACuGCC- -5'
12431 3' -61.6 NC_003324.1 + 22018 0.67 0.374553
Target:  5'- gCGCaUGUCGAgCGCAGCCUUGCgcGCGu -3'
miRNA:   3'- -GCG-GCGGCU-GCGUCGGAGCGacUGCc -5'
12431 3' -61.6 NC_003324.1 + 24927 0.67 0.374553
Target:  5'- aCGCCGcCCGGuCGCAGUguCUCGUcGACu- -3'
miRNA:   3'- -GCGGC-GGCU-GCGUCG--GAGCGaCUGcc -5'
12431 3' -61.6 NC_003324.1 + 2412 0.67 0.374553
Target:  5'- cCGCCaacGCCGAUGaugaAGCCgccgaCGCcGGCGGc -3'
miRNA:   3'- -GCGG---CGGCUGCg---UCGGa----GCGaCUGCC- -5'
12431 3' -61.6 NC_003324.1 + 36174 0.67 0.374553
Target:  5'- aCGCCGCCGACcugcuGCAGCaua-CUGAUGu -3'
miRNA:   3'- -GCGGCGGCUG-----CGUCGgagcGACUGCc -5'
12431 3' -61.6 NC_003324.1 + 21086 0.67 0.391419
Target:  5'- gGCCGCCGcggcgcgugcuGCGuCGGCUUCcacgucggGCUGGCGc -3'
miRNA:   3'- gCGGCGGC-----------UGC-GUCGGAG--------CGACUGCc -5'
12431 3' -61.6 NC_003324.1 + 49017 0.69 0.293642
Target:  5'- gGCCGCCcuCGCGGCCaUGCUucucaccucucccgcGGCGGc -3'
miRNA:   3'- gCGGCGGcuGCGUCGGaGCGA---------------CUGCC- -5'
12431 3' -61.6 NC_003324.1 + 21296 0.69 0.290872
Target:  5'- gGCCGCguuCGCcGCCUCGCcGGCGa -3'
miRNA:   3'- gCGGCGgcuGCGuCGGAGCGaCUGCc -5'
12431 3' -61.6 NC_003324.1 + 30062 0.7 0.251756
Target:  5'- aCGCCGCCGGuCGCGacaCCggcCGCUG-CGGc -3'
miRNA:   3'- -GCGGCGGCU-GCGUc--GGa--GCGACuGCC- -5'
12431 3' -61.6 NC_003324.1 + 56572 0.74 0.123027
Target:  5'- uGCCGCCGcccauaACGCcGCUaUCGCUGACGa -3'
miRNA:   3'- gCGGCGGC------UGCGuCGG-AGCGACUGCc -5'
12431 3' -61.6 NC_003324.1 + 14579 0.74 0.133173
Target:  5'- gGCCuGCCGGCGCaagcGGCCggcggCGCaGGCGGu -3'
miRNA:   3'- gCGG-CGGCUGCG----UCGGa----GCGaCUGCC- -5'
12431 3' -61.6 NC_003324.1 + 16233 0.72 0.191377
Target:  5'- gGCCguGCCGACGCGGCCagCGCagGGCc- -3'
miRNA:   3'- gCGG--CGGCUGCGUCGGa-GCGa-CUGcc -5'
12431 3' -61.6 NC_003324.1 + 18250 0.71 0.211711
Target:  5'- uGCCaUCGACGacagAGCCgcgacCGCUGACGGa -3'
miRNA:   3'- gCGGcGGCUGCg---UCGGa----GCGACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 22143 0.71 0.222559
Target:  5'- uGCCGUCGuCGUccGCCUCGCcGACGc -3'
miRNA:   3'- gCGGCGGCuGCGu-CGGAGCGaCUGCc -5'
12431 3' -61.6 NC_003324.1 + 28946 0.71 0.222559
Target:  5'- uGCCGCCuGGCGCugcuugagcaAGCgCUCGUUGACc- -3'
miRNA:   3'- gCGGCGG-CUGCG----------UCG-GAGCGACUGcc -5'
12431 3' -61.6 NC_003324.1 + 14808 0.7 0.233877
Target:  5'- aCGCgGCCGGCaucgGCAGCUUC-CUGgGCGGc -3'
miRNA:   3'- -GCGgCGGCUG----CGUCGGAGcGAC-UGCC- -5'
12431 3' -61.6 NC_003324.1 + 42566 0.7 0.239126
Target:  5'- uGCCGCaauGACcgugccgGCAGCCUCGCUGuaGGc -3'
miRNA:   3'- gCGGCGg--CUG-------CGUCGGAGCGACugCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.