miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12439 3' -58.5 NC_003324.1 + 48820 0.66 0.529701
Target:  5'- ---gAUGGCcugcagccugcuGGC-GCcgACGCGGUUGGCg -3'
miRNA:   3'- uuuaUGCCG------------CCGaCG--UGCGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 24041 0.66 0.519221
Target:  5'- ---gAUGGCGGCcuucucgGCAC-UGGCgGGCu -3'
miRNA:   3'- uuuaUGCCGCCGa------CGUGcGCCGaCCG- -5'
12439 3' -58.5 NC_003324.1 + 39720 0.66 0.519221
Target:  5'- ----uCGGUGGCUGgcUACGCGaGCUuGCg -3'
miRNA:   3'- uuuauGCCGCCGAC--GUGCGC-CGAcCG- -5'
12439 3' -58.5 NC_003324.1 + 16146 0.66 0.508823
Target:  5'- ---aGCGGgGGCcGCGCcagGCaucGCUGGCa -3'
miRNA:   3'- uuuaUGCCgCCGaCGUG---CGc--CGACCG- -5'
12439 3' -58.5 NC_003324.1 + 3539 0.66 0.507788
Target:  5'- ---aGCGGaacCGGCUGCAaaCGGCgcuucggUGGCg -3'
miRNA:   3'- uuuaUGCC---GCCGACGUgcGCCG-------ACCG- -5'
12439 3' -58.5 NC_003324.1 + 30421 0.66 0.498515
Target:  5'- cGAUugGGCcaGCUGCucGCGCGGgauCUGcGCa -3'
miRNA:   3'- uUUAugCCGc-CGACG--UGCGCC---GAC-CG- -5'
12439 3' -58.5 NC_003324.1 + 29242 0.66 0.498515
Target:  5'- ---gACGGCGGCUGUuCG-GGCcugcaucgccgGGCu -3'
miRNA:   3'- uuuaUGCCGCCGACGuGCgCCGa----------CCG- -5'
12439 3' -58.5 NC_003324.1 + 36712 0.67 0.458273
Target:  5'- uGAUGCGGauGC-GCugGCG-CUGGUa -3'
miRNA:   3'- uUUAUGCCgcCGaCGugCGCcGACCG- -5'
12439 3' -58.5 NC_003324.1 + 35314 0.67 0.448484
Target:  5'- ----cCGGCGGaUUGCGC-CGGCUGcuGCg -3'
miRNA:   3'- uuuauGCCGCC-GACGUGcGCCGAC--CG- -5'
12439 3' -58.5 NC_003324.1 + 35031 0.67 0.42926
Target:  5'- ---aGCGGCGGCgGCAgcaGCGGcCUGa- -3'
miRNA:   3'- uuuaUGCCGCCGaCGUg--CGCC-GACcg -5'
12439 3' -58.5 NC_003324.1 + 29470 0.68 0.419832
Target:  5'- ---cACGGCcgccuGGCUGCGgGCGcGUcgGGCg -3'
miRNA:   3'- uuuaUGCCG-----CCGACGUgCGC-CGa-CCG- -5'
12439 3' -58.5 NC_003324.1 + 23551 0.68 0.41053
Target:  5'- ----gUGGCGGCggGCGCGCucGGCgacGGUa -3'
miRNA:   3'- uuuauGCCGCCGa-CGUGCG--CCGa--CCG- -5'
12439 3' -58.5 NC_003324.1 + 42387 0.68 0.401357
Target:  5'- ----cCGGCGcCcgGCACGUGGCaGGCg -3'
miRNA:   3'- uuuauGCCGCcGa-CGUGCGCCGaCCG- -5'
12439 3' -58.5 NC_003324.1 + 7653 0.68 0.401357
Target:  5'- ---cGCGcCGGCaGUGC-CGGCUGGCg -3'
miRNA:   3'- uuuaUGCcGCCGaCGUGcGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 30114 0.68 0.374636
Target:  5'- ---gGCGGCGGCauggguggUGUugGUGGCgcaGCa -3'
miRNA:   3'- uuuaUGCCGCCG--------ACGugCGCCGac-CG- -5'
12439 3' -58.5 NC_003324.1 + 57045 0.68 0.374636
Target:  5'- cGGGUugGGCugGGgaGCG-GCGGCgagGGCg -3'
miRNA:   3'- -UUUAugCCG--CCgaCGUgCGCCGa--CCG- -5'
12439 3' -58.5 NC_003324.1 + 8197 0.69 0.349146
Target:  5'- ----cCGGCGGC-GCGCGC--CUGGCa -3'
miRNA:   3'- uuuauGCCGCCGaCGUGCGccGACCG- -5'
12439 3' -58.5 NC_003324.1 + 26802 0.69 0.349146
Target:  5'- ---gAC-GCGGCcGUGCGCuuGGCUGGCu -3'
miRNA:   3'- uuuaUGcCGCCGaCGUGCG--CCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 10392 0.69 0.324916
Target:  5'- --cUAgGaGCGGaUGCACGCGGCggaacguggUGGCg -3'
miRNA:   3'- uuuAUgC-CGCCgACGUGCGCCG---------ACCG- -5'
12439 3' -58.5 NC_003324.1 + 47713 0.69 0.324916
Target:  5'- cGAcgAUGGCGGCccgGUcgccgucauGCGCGGCgUGGUa -3'
miRNA:   3'- -UUuaUGCCGCCGa--CG---------UGCGCCG-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.