miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12443 5' -57.2 NC_003324.1 + 41705 0.66 0.628523
Target:  5'- gGcGAGCCguGGCaAUGGUgGgCGUGGCUCu -3'
miRNA:   3'- aC-CUCGG--CCG-UAUCAgCgGUAUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 5889 0.66 0.628523
Target:  5'- uUGGGGaugaCGGCcug--CGCCuugAUGGCCCg -3'
miRNA:   3'- -ACCUCg---GCCGuaucaGCGG---UAUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 28992 0.66 0.617626
Target:  5'- aGGAGCCGGaaucGGUCGCagcgaaggaCGaGGCCg -3'
miRNA:   3'- aCCUCGGCCgua-UCAGCG---------GUaUCGGg -5'
12443 5' -57.2 NC_003324.1 + 20589 0.66 0.617626
Target:  5'- gGGAuCCGGUgcuGUGG-CGCCGUcGCCa -3'
miRNA:   3'- aCCUcGGCCG---UAUCaGCGGUAuCGGg -5'
12443 5' -57.2 NC_003324.1 + 43013 0.66 0.615448
Target:  5'- gGGAcgagaccGCCGGCGcagugaccgccaaUGGUCGCCcc-GCCg -3'
miRNA:   3'- aCCU-------CGGCCGU-------------AUCAGCGGuauCGGg -5'
12443 5' -57.2 NC_003324.1 + 56640 0.66 0.606743
Target:  5'- aUGGGcGgCGGCAUgGGUCGCgGgcaacuucGCCCg -3'
miRNA:   3'- -ACCU-CgGCCGUA-UCAGCGgUau------CGGG- -5'
12443 5' -57.2 NC_003324.1 + 4978 0.66 0.59588
Target:  5'- cGGAGCCGaaaGCGauaaCGCCAgccugacGGCCCa -3'
miRNA:   3'- aCCUCGGC---CGUaucaGCGGUa------UCGGG- -5'
12443 5' -57.2 NC_003324.1 + 11088 0.66 0.59588
Target:  5'- cGGuGCCaacuugaacGGCAacaccuacaaUGGccugCGCUAUGGCCCg -3'
miRNA:   3'- aCCuCGG---------CCGU----------AUCa---GCGGUAUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 53025 0.66 0.589377
Target:  5'- cUGaGAGCUGGCAcaaggacaaagcccuUGGUCGCCcgGuUCCu -3'
miRNA:   3'- -AC-CUCGGCCGU---------------AUCAGCGGuaUcGGG- -5'
12443 5' -57.2 NC_003324.1 + 20408 0.67 0.5678
Target:  5'- cGGAGCCGuCAUcGUCGaucgcaagcagguacUCAUGGCCg -3'
miRNA:   3'- aCCUCGGCcGUAuCAGC---------------GGUAUCGGg -5'
12443 5' -57.2 NC_003324.1 + 27228 0.67 0.563507
Target:  5'- aGGaAGUgGGCGgccaacGUCGCCAacgGGCUCa -3'
miRNA:   3'- aCC-UCGgCCGUau----CAGCGGUa--UCGGG- -5'
12443 5' -57.2 NC_003324.1 + 24405 0.67 0.562436
Target:  5'- aGGAccgcguuGCCGGCAUGGUgcgcguccgcgaCGCCuucGCCa -3'
miRNA:   3'- aCCU-------CGGCCGUAUCA------------GCGGuauCGGg -5'
12443 5' -57.2 NC_003324.1 + 5545 0.67 0.552814
Target:  5'- gUGGGGCgGGCGacGcCGCCu--GCCUa -3'
miRNA:   3'- -ACCUCGgCCGUauCaGCGGuauCGGG- -5'
12443 5' -57.2 NC_003324.1 + 14472 0.67 0.552814
Target:  5'- cGGAccuuGCUGGCAccGUCGCgGaAGCCg -3'
miRNA:   3'- aCCU----CGGCCGUauCAGCGgUaUCGGg -5'
12443 5' -57.2 NC_003324.1 + 42104 0.68 0.51488
Target:  5'- aGGGGCCGGgAgcgcuucgcacucGUCGCCAauGCCg -3'
miRNA:   3'- aCCUCGGCCgUau-----------CAGCGGUauCGGg -5'
12443 5' -57.2 NC_003324.1 + 42578 0.68 0.510728
Target:  5'- -cGuGCCGGCAgccUCGCUGUAGgCCg -3'
miRNA:   3'- acCuCGGCCGUaucAGCGGUAUCgGG- -5'
12443 5' -57.2 NC_003324.1 + 36599 0.68 0.510728
Target:  5'- --cAGCCGGUcuccuAUGgcuGUCGCCGUcGCCCu -3'
miRNA:   3'- accUCGGCCG-----UAU---CAGCGGUAuCGGG- -5'
12443 5' -57.2 NC_003324.1 + 36168 0.68 0.490185
Target:  5'- aGGAGCagGGCucacUCGCCAcAGCCg -3'
miRNA:   3'- aCCUCGg-CCGuaucAGCGGUaUCGGg -5'
12443 5' -57.2 NC_003324.1 + 16557 0.68 0.484097
Target:  5'- aGGGGCUGGCugcucaucgucUCGCCGUAGUUg -3'
miRNA:   3'- aCCUCGGCCGuauc-------AGCGGUAUCGGg -5'
12443 5' -57.2 NC_003324.1 + 4845 0.68 0.480059
Target:  5'- aUGGcGCCGGCAacaacGUUgcgGCCGgucgAGCCCu -3'
miRNA:   3'- -ACCuCGGCCGUau---CAG---CGGUa---UCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.