miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12445 3' -56 NC_003324.1 + 55248 0.66 0.696665
Target:  5'- aCGuGCcgGCGGAcg-GCACcGCGCg -3'
miRNA:   3'- aGCcCGuaCGCCUauaCGUGaCGCGg -5'
12445 3' -56 NC_003324.1 + 157 0.66 0.685838
Target:  5'- uUCGGGauaGgGGAUAUuccuguagacgGCGC-GCGCCa -3'
miRNA:   3'- -AGCCCguaCgCCUAUA-----------CGUGaCGCGG- -5'
12445 3' -56 NC_003324.1 + 45828 0.66 0.684752
Target:  5'- -gGGGC-UGCGGcgagaacagugagGUGgaaacgGCGCgggGCGCCu -3'
miRNA:   3'- agCCCGuACGCC-------------UAUa-----CGUGa--CGCGG- -5'
12445 3' -56 NC_003324.1 + 4662 0.66 0.684752
Target:  5'- cCGGGCcgacaucAUGCGGGccUGgAcCUGCGCg -3'
miRNA:   3'- aGCCCG-------UACGCCUauACgU-GACGCGg -5'
12445 3' -56 NC_003324.1 + 38349 0.66 0.674959
Target:  5'- -aGGGCAc-CGGGgcgGCGCUGguCGCCg -3'
miRNA:   3'- agCCCGUacGCCUauaCGUGAC--GCGG- -5'
12445 3' -56 NC_003324.1 + 29876 0.66 0.674959
Target:  5'- aUCaGGCAggGUGGAUAcgGCGCgaucuucgGCGCg -3'
miRNA:   3'- -AGcCCGUa-CGCCUAUa-CGUGa-------CGCGg -5'
12445 3' -56 NC_003324.1 + 56772 0.66 0.664041
Target:  5'- gCGGGCAggagGUGGAgccgGUAagcGUGCCg -3'
miRNA:   3'- aGCCCGUa---CGCCUaua-CGUga-CGCGG- -5'
12445 3' -56 NC_003324.1 + 24005 0.66 0.664041
Target:  5'- -aGGGCG-GCGGuaggGCuGCUGCGUg -3'
miRNA:   3'- agCCCGUaCGCCuauaCG-UGACGCGg -5'
12445 3' -56 NC_003324.1 + 22065 0.66 0.664041
Target:  5'- gCGGGCuauggcgacuAUGcCGGcuccaagGUGCAUcGCGCCg -3'
miRNA:   3'- aGCCCG----------UAC-GCCua-----UACGUGaCGCGG- -5'
12445 3' -56 NC_003324.1 + 54937 0.66 0.664041
Target:  5'- cCGGGCcUGCGGGgucggaaccuUGaGgGCUGCGgCa -3'
miRNA:   3'- aGCCCGuACGCCU----------AUaCgUGACGCgG- -5'
12445 3' -56 NC_003324.1 + 25518 0.66 0.664041
Target:  5'- gUGGGUcgGCuGGGgcgGC-CUGCGCa -3'
miRNA:   3'- aGCCCGuaCG-CCUauaCGuGACGCGg -5'
12445 3' -56 NC_003324.1 + 42163 0.66 0.661853
Target:  5'- aUGGGCcgcgaucguacuUGCcGAacgacgGCACUGCGCCg -3'
miRNA:   3'- aGCCCGu-----------ACGcCUaua---CGUGACGCGG- -5'
12445 3' -56 NC_003324.1 + 42389 0.66 0.641028
Target:  5'- aUCGcGGUAUccuggucGCGGGUccGCAacaGCGCCa -3'
miRNA:   3'- -AGC-CCGUA-------CGCCUAuaCGUga-CGCGG- -5'
12445 3' -56 NC_003324.1 + 35538 0.67 0.63115
Target:  5'- gUUGGuggcugugaucuGCGaGCGGAUcUGCAaggcCUGCGCCu -3'
miRNA:   3'- -AGCC------------CGUaCGCCUAuACGU----GACGCGG- -5'
12445 3' -56 NC_003324.1 + 6333 0.67 0.620174
Target:  5'- cUUGGGCAUGUcuuaccucuGGcgcuUGCugcgcugcuGCUGCGCCu -3'
miRNA:   3'- -AGCCCGUACG---------CCuau-ACG---------UGACGCGG- -5'
12445 3' -56 NC_003324.1 + 26790 0.67 0.609209
Target:  5'- uUCGgcuuGGCAgacGCGGccGUGCGCUuggcuggcuuugGCGCCg -3'
miRNA:   3'- -AGC----CCGUa--CGCCuaUACGUGA------------CGCGG- -5'
12445 3' -56 NC_003324.1 + 30748 0.67 0.598264
Target:  5'- cUCGGGaGUGaCGGAagcacggGCGCgguccUGCGCCg -3'
miRNA:   3'- -AGCCCgUAC-GCCUaua----CGUG-----ACGCGG- -5'
12445 3' -56 NC_003324.1 + 55033 0.68 0.576468
Target:  5'- cCGGGCAggcaagGCGGAcggcUGgGCUGcCGCg -3'
miRNA:   3'- aGCCCGUa-----CGCCUau--ACgUGAC-GCGg -5'
12445 3' -56 NC_003324.1 + 26180 0.68 0.575382
Target:  5'- gUCGGcggucucGC-UGCGGGgcUGCGuCUGCGUCg -3'
miRNA:   3'- -AGCC-------CGuACGCCUauACGU-GACGCGG- -5'
12445 3' -56 NC_003324.1 + 25196 0.68 0.565634
Target:  5'- cCaGGCAUGagaccaaGGAaguUGC-CUGCGCCg -3'
miRNA:   3'- aGcCCGUACg------CCUau-ACGuGACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.