miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12446 5' -56.1 NC_003324.1 + 23797 0.66 0.734685
Target:  5'- gCCUCGGCgAGCuucuuCUUGACGuUGCCGg-- -3'
miRNA:   3'- -GGAGCCG-UCGc----GAGCUGU-AUGGCagc -5'
12446 5' -56.1 NC_003324.1 + 5126 0.66 0.692784
Target:  5'- uCCUUGGCGGCGgugucgaUCGAgAUcacGCCGUa- -3'
miRNA:   3'- -GGAGCCGUCGCg------AGCUgUA---UGGCAgc -5'
12446 5' -56.1 NC_003324.1 + 50049 0.66 0.692784
Target:  5'- aUCagGGCAGCGCcgaUCGcCAUGCUGaCGa -3'
miRNA:   3'- -GGagCCGUCGCG---AGCuGUAUGGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 23260 0.66 0.692784
Target:  5'- --gCGGUAccGCGCUCGccgacCAUACCGUgGg -3'
miRNA:   3'- ggaGCCGU--CGCGAGCu----GUAUGGCAgC- -5'
12446 5' -56.1 NC_003324.1 + 52987 0.66 0.70337
Target:  5'- --gCGGCGGaacucuaGCUCGACAcguaGCgCGUCGa -3'
miRNA:   3'- ggaGCCGUCg------CGAGCUGUa---UG-GCAGC- -5'
12446 5' -56.1 NC_003324.1 + 54491 0.66 0.724331
Target:  5'- gCC-CGGCAGCGgUCccgggGAguUGCCGUUc -3'
miRNA:   3'- -GGaGCCGUCGCgAG-----CUguAUGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 37780 0.66 0.713889
Target:  5'- gCUCGGUcugAGCGCcuaUGACAaacgcACCGUCa -3'
miRNA:   3'- gGAGCCG---UCGCGa--GCUGUa----UGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 57381 0.66 0.734685
Target:  5'- gCUCGGCGGagGCgagggCGGCAcgACCGgCGu -3'
miRNA:   3'- gGAGCCGUCg-CGa----GCUGUa-UGGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 15116 0.66 0.734685
Target:  5'- --aUGGCGuccuGCGCcaugaUCGACcUGCCGUCGc -3'
miRNA:   3'- ggaGCCGU----CGCG-----AGCUGuAUGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 39676 0.66 0.734685
Target:  5'- uCCUCGaCAucGUGCUUGAUGUGCCG-Ca -3'
miRNA:   3'- -GGAGCcGU--CGCGAGCUGUAUGGCaGc -5'
12446 5' -56.1 NC_003324.1 + 21864 0.66 0.734685
Target:  5'- uCCUCGGCGGC-CUUGGCcuuCUucgggGUCGa -3'
miRNA:   3'- -GGAGCCGUCGcGAGCUGuauGG-----CAGC- -5'
12446 5' -56.1 NC_003324.1 + 21291 0.66 0.724331
Target:  5'- aUCUCGGCcGCGUUCGcCGccucGCCGgCGa -3'
miRNA:   3'- -GGAGCCGuCGCGAGCuGUa---UGGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 15629 0.67 0.671456
Target:  5'- aCC-CGGuCGGCGCUUucCAUgucGCCGUUGg -3'
miRNA:   3'- -GGaGCC-GUCGCGAGcuGUA---UGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 51810 0.67 0.660733
Target:  5'- gCUUGGC-GCcCUCGGCgAUugCGUCGn -3'
miRNA:   3'- gGAGCCGuCGcGAGCUG-UAugGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 29016 0.67 0.628451
Target:  5'- uCCUUaGCAgcGCGCUCGACgcgGUACCGa-- -3'
miRNA:   3'- -GGAGcCGU--CGCGAGCUG---UAUGGCagc -5'
12446 5' -56.1 NC_003324.1 + 49522 0.67 0.639221
Target:  5'- cUCUCGGCcguaucgagcGGCGaggCGACGUGCaugGUCGu -3'
miRNA:   3'- -GGAGCCG----------UCGCga-GCUGUAUGg--CAGC- -5'
12446 5' -56.1 NC_003324.1 + 23905 0.67 0.639221
Target:  5'- uCCgcaGGUuugccguagAGCGC-CGACAUGgCGUCGa -3'
miRNA:   3'- -GGag-CCG---------UCGCGaGCUGUAUgGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 41655 0.67 0.671456
Target:  5'- uCgUCGGCGGCGC--GACGUAgCCGaCGc -3'
miRNA:   3'- -GgAGCCGUCGCGagCUGUAU-GGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 43602 0.67 0.671456
Target:  5'- aCUUGGCGgucGCGCUCGAC-UGCuCGg-- -3'
miRNA:   3'- gGAGCCGU---CGCGAGCUGuAUG-GCagc -5'
12446 5' -56.1 NC_003324.1 + 21761 0.67 0.672526
Target:  5'- gCUCuGCAGgGCgaggaacucguccggCGACAUGuuGUCGa -3'
miRNA:   3'- gGAGcCGUCgCGa--------------GCUGUAUggCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.