miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12446 5' -56.1 NC_003324.1 + 21761 0.67 0.672526
Target:  5'- gCUCuGCAGgGCgaggaacucguccggCGACAUGuuGUCGa -3'
miRNA:   3'- gGAGcCGUCgCGa--------------GCUGUAUggCAGC- -5'
12446 5' -56.1 NC_003324.1 + 14897 0.68 0.596195
Target:  5'- cCCgagGGCGacGCGCUCGACGcggucaacaacaUGCCgGUCGa -3'
miRNA:   3'- -GGag-CCGU--CGCGAGCUGU------------AUGG-CAGC- -5'
12446 5' -56.1 NC_003324.1 + 8327 0.68 0.596195
Target:  5'- --cCGuCGGCGCUCGuuACGgugACCGUCGg -3'
miRNA:   3'- ggaGCcGUCGCGAGC--UGUa--UGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 23425 0.68 0.617684
Target:  5'- gCgUCGGUGGCGCccuggUUGACcacagucuUGCCGUCGc -3'
miRNA:   3'- -GgAGCCGUCGCG-----AGCUGu-------AUGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 29016 0.67 0.628451
Target:  5'- uCCUUaGCAgcGCGCUCGACgcgGUACCGa-- -3'
miRNA:   3'- -GGAGcCGU--CGCGAGCUG---UAUGGCagc -5'
12446 5' -56.1 NC_003324.1 + 49522 0.67 0.639221
Target:  5'- cUCUCGGCcguaucgagcGGCGaggCGACGUGCaugGUCGu -3'
miRNA:   3'- -GGAGCCG----------UCGCga-GCUGUAUGg--CAGC- -5'
12446 5' -56.1 NC_003324.1 + 23905 0.67 0.639221
Target:  5'- uCCgcaGGUuugccguagAGCGC-CGACAUGgCGUCGa -3'
miRNA:   3'- -GGag-CCG---------UCGCGaGCUGUAUgGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 41655 0.67 0.671456
Target:  5'- uCgUCGGCGGCGC--GACGUAgCCGaCGc -3'
miRNA:   3'- -GgAGCCGUCGCGagCUGUAU-GGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 43602 0.67 0.671456
Target:  5'- aCUUGGCGgucGCGCUCGAC-UGCuCGg-- -3'
miRNA:   3'- gGAGCCGU---CGCGAGCUGuAUG-GCagc -5'
12446 5' -56.1 NC_003324.1 + 12360 0.68 0.596195
Target:  5'- gCUCGGCAGCauuCUCGugGUAgUGaCGa -3'
miRNA:   3'- gGAGCCGUCGc--GAGCugUAUgGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 6377 0.68 0.596195
Target:  5'- ---aGGCuauuGUGCUCGcCAaGCCGUCGg -3'
miRNA:   3'- ggagCCGu---CGCGAGCuGUaUGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 28561 0.68 0.574823
Target:  5'- --aUGGCGGCGUuagcaUCGACAUagACCGUUu -3'
miRNA:   3'- ggaGCCGUCGCG-----AGCUGUA--UGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 25586 0.75 0.264312
Target:  5'- uCCUCGGCGGUGa-UGACAUAguCUGUCGg -3'
miRNA:   3'- -GGAGCCGUCGCgaGCUGUAU--GGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 1991 0.72 0.36181
Target:  5'- --aCGGCuuCGCUCGACGUucucaACCGUCa -3'
miRNA:   3'- ggaGCCGucGCGAGCUGUA-----UGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 39500 0.71 0.411799
Target:  5'- uCgUCGGCAGagaacccggccaaaUGCUCGuACAUcaGCCGUCGu -3'
miRNA:   3'- -GgAGCCGUC--------------GCGAGC-UGUA--UGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 38354 0.7 0.452221
Target:  5'- aCCggGGCGGCGCUgGuC--GCCGUCGu -3'
miRNA:   3'- -GGagCCGUCGCGAgCuGuaUGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 32403 0.7 0.481668
Target:  5'- aCCUCGGCcGCGCUCu---UACCG-CGc -3'
miRNA:   3'- -GGAGCCGuCGCGAGcuguAUGGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 47670 0.69 0.512014
Target:  5'- --cCGGU-GCGCUgGACAguuCCGUCGg -3'
miRNA:   3'- ggaGCCGuCGCGAgCUGUau-GGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 18897 0.69 0.55363
Target:  5'- gCUCGGUcGCGUUCGGC-UGCgCGcUCGa -3'
miRNA:   3'- gGAGCCGuCGCGAGCUGuAUG-GC-AGC- -5'
12446 5' -56.1 NC_003324.1 + 24821 0.68 0.574823
Target:  5'- gUUCGGCAggcggaucGCGC-CGACAaggucgGCCGUCu -3'
miRNA:   3'- gGAGCCGU--------CGCGaGCUGUa-----UGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.