miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12446 5' -56.1 NC_003324.1 + 15116 0.66 0.734685
Target:  5'- --aUGGCGuccuGCGCcaugaUCGACcUGCCGUCGc -3'
miRNA:   3'- ggaGCCGU----CGCG-----AGCUGuAUGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 51784 0.71 0.433145
Target:  5'- gCCUCGcugauauccuGCAGgCGCUCGACGcgaaCGUCGg -3'
miRNA:   3'- -GGAGC----------CGUC-GCGAGCUGUaug-GCAGC- -5'
12446 5' -56.1 NC_003324.1 + 13439 0.73 0.322332
Target:  5'- uCCguaCGGCAGCGCgucgcauguuuggucCGGCGcggcUGCCGUCGa -3'
miRNA:   3'- -GGa--GCCGUCGCGa--------------GCUGU----AUGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 44101 0.79 0.137255
Target:  5'- aCCUC-GCAGCGCUCGGCAUGaucCCGgCGg -3'
miRNA:   3'- -GGAGcCGUCGCGAGCUGUAU---GGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 52987 0.66 0.70337
Target:  5'- --gCGGCGGaacucuaGCUCGACAcguaGCgCGUCGa -3'
miRNA:   3'- ggaGCCGUCg------CGAGCUGUa---UG-GCAGC- -5'
12446 5' -56.1 NC_003324.1 + 23260 0.66 0.692784
Target:  5'- --gCGGUAccGCGCUCGccgacCAUACCGUgGg -3'
miRNA:   3'- ggaGCCGU--CGCGAGCu----GUAUGGCAgC- -5'
12446 5' -56.1 NC_003324.1 + 5126 0.66 0.692784
Target:  5'- uCCUUGGCGGCGgugucgaUCGAgAUcacGCCGUa- -3'
miRNA:   3'- -GGAGCCGUCGCg------AGCUgUA---UGGCAgc -5'
12446 5' -56.1 NC_003324.1 + 15629 0.67 0.671456
Target:  5'- aCC-CGGuCGGCGCUUucCAUgucGCCGUUGg -3'
miRNA:   3'- -GGaGCC-GUCGCGAGcuGUA---UGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 30552 0.68 0.574823
Target:  5'- gCUCGGCGGCGCcgauUCGACccGCaaCGuUCGg -3'
miRNA:   3'- gGAGCCGUCGCG----AGCUGuaUG--GC-AGC- -5'
12446 5' -56.1 NC_003324.1 + 11009 0.71 0.442625
Target:  5'- aCCcCGGCGGUGUUgGcauACAUACCGaUCGg -3'
miRNA:   3'- -GGaGCCGUCGCGAgC---UGUAUGGC-AGC- -5'
12446 5' -56.1 NC_003324.1 + 33755 0.69 0.512014
Target:  5'- gCCUUGGCGGCaGCgcaGGCGUAUCGagCGu -3'
miRNA:   3'- -GGAGCCGUCG-CGag-CUGUAUGGCa-GC- -5'
12446 5' -56.1 NC_003324.1 + 40266 0.68 0.58549
Target:  5'- uCgUCGGCAuCGCUCGGCugauguucCUGUCGa -3'
miRNA:   3'- -GgAGCCGUcGCGAGCUGuau-----GGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 57381 0.66 0.734685
Target:  5'- gCUCGGCGGagGCgagggCGGCAcgACCGgCGu -3'
miRNA:   3'- gGAGCCGUCg-CGa----GCUGUa-UGGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 13165 0.7 0.47076
Target:  5'- gCgUCGGCGGCGgUCGGCggcggcgGUACCGg-- -3'
miRNA:   3'- -GgAGCCGUCGCgAGCUG-------UAUGGCagc -5'
12446 5' -56.1 NC_003324.1 + 54491 0.66 0.724331
Target:  5'- gCC-CGGCAGCGgUCccgggGAguUGCCGUUc -3'
miRNA:   3'- -GGaGCCGUCGCgAG-----CUguAUGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 51810 0.67 0.660733
Target:  5'- gCUUGGC-GCcCUCGGCgAUugCGUCGn -3'
miRNA:   3'- gGAGCCGuCGcGAGCUG-UAugGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 25325 0.7 0.459005
Target:  5'- gCCUUGGCuuuaagggcggccaGGUGCUCGA---ACCGUCa -3'
miRNA:   3'- -GGAGCCG--------------UCGCGAGCUguaUGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 43241 0.72 0.396446
Target:  5'- gCUCGGauuGGCGCUCGcucaACAagcucGCCGUCGa -3'
miRNA:   3'- gGAGCCg--UCGCGAGC----UGUa----UGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 37780 0.66 0.713889
Target:  5'- gCUCGGUcugAGCGCcuaUGACAaacgcACCGUCa -3'
miRNA:   3'- gGAGCCG---UCGCGa--GCUGUa----UGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 50049 0.66 0.692784
Target:  5'- aUCagGGCAGCGCcgaUCGcCAUGCUGaCGa -3'
miRNA:   3'- -GGagCCGUCGCG---AGCuGUAUGGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.