miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12446 5' -56.1 NC_003324.1 + 30552 0.68 0.574823
Target:  5'- gCUCGGCGGCGCcgauUCGACccGCaaCGuUCGg -3'
miRNA:   3'- gGAGCCGUCGCG----AGCUGuaUG--GC-AGC- -5'
12446 5' -56.1 NC_003324.1 + 29016 0.67 0.628451
Target:  5'- uCCUUaGCAgcGCGCUCGACgcgGUACCGa-- -3'
miRNA:   3'- -GGAGcCGU--CGCGAGCUG---UAUGGCagc -5'
12446 5' -56.1 NC_003324.1 + 28561 0.68 0.574823
Target:  5'- --aUGGCGGCGUuagcaUCGACAUagACCGUUu -3'
miRNA:   3'- ggaGCCGUCGCG-----AGCUGUA--UGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 26487 1.11 0.000716
Target:  5'- aCCUCGGCAGCGCUCGACAUACCGUCGa -3'
miRNA:   3'- -GGAGCCGUCGCGAGCUGUAUGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 25586 0.75 0.264312
Target:  5'- uCCUCGGCGGUGa-UGACAUAguCUGUCGg -3'
miRNA:   3'- -GGAGCCGUCGCgaGCUGUAU--GGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 25325 0.7 0.459005
Target:  5'- gCCUUGGCuuuaagggcggccaGGUGCUCGA---ACCGUCa -3'
miRNA:   3'- -GGAGCCG--------------UCGCGAGCUguaUGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 24821 0.68 0.574823
Target:  5'- gUUCGGCAggcggaucGCGC-CGACAaggucgGCCGUCu -3'
miRNA:   3'- gGAGCCGU--------CGCGaGCUGUa-----UGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 23905 0.67 0.639221
Target:  5'- uCCgcaGGUuugccguagAGCGC-CGACAUGgCGUCGa -3'
miRNA:   3'- -GGag-CCG---------UCGCGaGCUGUAUgGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 23797 0.66 0.734685
Target:  5'- gCCUCGGCgAGCuucuuCUUGACGuUGCCGg-- -3'
miRNA:   3'- -GGAGCCG-UCGc----GAGCUGU-AUGGCagc -5'
12446 5' -56.1 NC_003324.1 + 23425 0.68 0.617684
Target:  5'- gCgUCGGUGGCGCccuggUUGACcacagucuUGCCGUCGc -3'
miRNA:   3'- -GgAGCCGUCGCG-----AGCUGu-------AUGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 23260 0.66 0.692784
Target:  5'- --gCGGUAccGCGCUCGccgacCAUACCGUgGg -3'
miRNA:   3'- ggaGCCGU--CGCGAGCu----GUAUGGCAgC- -5'
12446 5' -56.1 NC_003324.1 + 22094 0.77 0.199432
Target:  5'- ---aGGCuGCGCUCGACAUGCgccuCGUCGa -3'
miRNA:   3'- ggagCCGuCGCGAGCUGUAUG----GCAGC- -5'
12446 5' -56.1 NC_003324.1 + 21864 0.66 0.734685
Target:  5'- uCCUCGGCGGC-CUUGGCcuuCUucgggGUCGa -3'
miRNA:   3'- -GGAGCCGUCGcGAGCUGuauGG-----CAGC- -5'
12446 5' -56.1 NC_003324.1 + 21761 0.67 0.672526
Target:  5'- gCUCuGCAGgGCgaggaacucguccggCGACAUGuuGUCGa -3'
miRNA:   3'- gGAGcCGUCgCGa--------------GCUGUAUggCAGC- -5'
12446 5' -56.1 NC_003324.1 + 21291 0.66 0.724331
Target:  5'- aUCUCGGCcGCGUUCGcCGccucGCCGgCGa -3'
miRNA:   3'- -GGAGCCGuCGCGAGCuGUa---UGGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 18897 0.69 0.55363
Target:  5'- gCUCGGUcGCGUUCGGC-UGCgCGcUCGa -3'
miRNA:   3'- gGAGCCGuCGCGAGCUGuAUG-GC-AGC- -5'
12446 5' -56.1 NC_003324.1 + 15629 0.67 0.671456
Target:  5'- aCC-CGGuCGGCGCUUucCAUgucGCCGUUGg -3'
miRNA:   3'- -GGaGCC-GUCGCGAGcuGUA---UGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 15116 0.66 0.734685
Target:  5'- --aUGGCGuccuGCGCcaugaUCGACcUGCCGUCGc -3'
miRNA:   3'- ggaGCCGU----CGCG-----AGCUGuAUGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 14897 0.68 0.596195
Target:  5'- cCCgagGGCGacGCGCUCGACGcggucaacaacaUGCCgGUCGa -3'
miRNA:   3'- -GGag-CCGU--CGCGAGCUGU------------AUGG-CAGC- -5'
12446 5' -56.1 NC_003324.1 + 13439 0.73 0.322332
Target:  5'- uCCguaCGGCAGCGCgucgcauguuuggucCGGCGcggcUGCCGUCGa -3'
miRNA:   3'- -GGa--GCCGUCGCGa--------------GCUGU----AUGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.