miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12446 5' -56.1 NC_003324.1 + 57381 0.66 0.734685
Target:  5'- gCUCGGCGGagGCgagggCGGCAcgACCGgCGu -3'
miRNA:   3'- gGAGCCGUCg-CGa----GCUGUa-UGGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 54491 0.66 0.724331
Target:  5'- gCC-CGGCAGCGgUCccgggGAguUGCCGUUc -3'
miRNA:   3'- -GGaGCCGUCGCgAG-----CUguAUGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 52987 0.66 0.70337
Target:  5'- --gCGGCGGaacucuaGCUCGACAcguaGCgCGUCGa -3'
miRNA:   3'- ggaGCCGUCg------CGAGCUGUa---UG-GCAGC- -5'
12446 5' -56.1 NC_003324.1 + 51810 0.67 0.660733
Target:  5'- gCUUGGC-GCcCUCGGCgAUugCGUCGn -3'
miRNA:   3'- gGAGCCGuCGcGAGCUG-UAugGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 51784 0.71 0.433145
Target:  5'- gCCUCGcugauauccuGCAGgCGCUCGACGcgaaCGUCGg -3'
miRNA:   3'- -GGAGC----------CGUC-GCGAGCUGUaug-GCAGC- -5'
12446 5' -56.1 NC_003324.1 + 50049 0.66 0.692784
Target:  5'- aUCagGGCAGCGCcgaUCGcCAUGCUGaCGa -3'
miRNA:   3'- -GGagCCGUCGCG---AGCuGUAUGGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 49724 0.69 0.54312
Target:  5'- -aUCGGCAGCGUcgUCGAaGUugCGaUCGu -3'
miRNA:   3'- ggAGCCGUCGCG--AGCUgUAugGC-AGC- -5'
12446 5' -56.1 NC_003324.1 + 49522 0.67 0.639221
Target:  5'- cUCUCGGCcguaucgagcGGCGaggCGACGUGCaugGUCGu -3'
miRNA:   3'- -GGAGCCG----------UCGCga-GCUGUAUGg--CAGC- -5'
12446 5' -56.1 NC_003324.1 + 47670 0.69 0.512014
Target:  5'- --cCGGU-GCGCUgGACAguuCCGUCGg -3'
miRNA:   3'- ggaGCCGuCGCGAgCUGUau-GGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 44101 0.79 0.137255
Target:  5'- aCCUC-GCAGCGCUCGGCAUGaucCCGgCGg -3'
miRNA:   3'- -GGAGcCGUCGCGAGCUGUAU---GGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 43602 0.67 0.671456
Target:  5'- aCUUGGCGgucGCGCUCGAC-UGCuCGg-- -3'
miRNA:   3'- gGAGCCGU---CGCGAGCUGuAUG-GCagc -5'
12446 5' -56.1 NC_003324.1 + 43241 0.72 0.396446
Target:  5'- gCUCGGauuGGCGCUCGcucaACAagcucGCCGUCGa -3'
miRNA:   3'- gGAGCCg--UCGCGAGC----UGUa----UGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 41655 0.67 0.671456
Target:  5'- uCgUCGGCGGCGC--GACGUAgCCGaCGc -3'
miRNA:   3'- -GgAGCCGUCGCGagCUGUAU-GGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 40266 0.68 0.58549
Target:  5'- uCgUCGGCAuCGCUCGGCugauguucCUGUCGa -3'
miRNA:   3'- -GgAGCCGUcGCGAGCUGuau-----GGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 39676 0.66 0.734685
Target:  5'- uCCUCGaCAucGUGCUUGAUGUGCCG-Ca -3'
miRNA:   3'- -GGAGCcGU--CGCGAGCUGUAUGGCaGc -5'
12446 5' -56.1 NC_003324.1 + 39500 0.71 0.411799
Target:  5'- uCgUCGGCAGagaacccggccaaaUGCUCGuACAUcaGCCGUCGu -3'
miRNA:   3'- -GgAGCCGUC--------------GCGAGC-UGUA--UGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 38354 0.7 0.452221
Target:  5'- aCCggGGCGGCGCUgGuC--GCCGUCGu -3'
miRNA:   3'- -GGagCCGUCGCGAgCuGuaUGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 37780 0.66 0.713889
Target:  5'- gCUCGGUcugAGCGCcuaUGACAaacgcACCGUCa -3'
miRNA:   3'- gGAGCCG---UCGCGa--GCUGUa----UGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 33755 0.69 0.512014
Target:  5'- gCCUUGGCGGCaGCgcaGGCGUAUCGagCGu -3'
miRNA:   3'- -GGAGCCGUCG-CGag-CUGUAUGGCa-GC- -5'
12446 5' -56.1 NC_003324.1 + 32403 0.7 0.481668
Target:  5'- aCCUCGGCcGCGCUCu---UACCG-CGc -3'
miRNA:   3'- -GGAGCCGuCGCGAGcuguAUGGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.