miRNA display CGI


Results 41 - 47 of 47 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12446 5' -56.1 NC_003324.1 + 21291 0.66 0.724331
Target:  5'- aUCUCGGCcGCGUUCGcCGccucGCCGgCGa -3'
miRNA:   3'- -GGAGCCGuCGCGAGCuGUa---UGGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 54491 0.66 0.724331
Target:  5'- gCC-CGGCAGCGgUCccgggGAguUGCCGUUc -3'
miRNA:   3'- -GGaGCCGUCGCgAG-----CUguAUGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 39676 0.66 0.734685
Target:  5'- uCCUCGaCAucGUGCUUGAUGUGCCG-Ca -3'
miRNA:   3'- -GGAGCcGU--CGCGAGCUGUAUGGCaGc -5'
12446 5' -56.1 NC_003324.1 + 15116 0.66 0.734685
Target:  5'- --aUGGCGuccuGCGCcaugaUCGACcUGCCGUCGc -3'
miRNA:   3'- ggaGCCGU----CGCG-----AGCUGuAUGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 57381 0.66 0.734685
Target:  5'- gCUCGGCGGagGCgagggCGGCAcgACCGgCGu -3'
miRNA:   3'- gGAGCCGUCg-CGa----GCUGUa-UGGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 21864 0.66 0.734685
Target:  5'- uCCUCGGCGGC-CUUGGCcuuCUucgggGUCGa -3'
miRNA:   3'- -GGAGCCGUCGcGAGCUGuauGG-----CAGC- -5'
12446 5' -56.1 NC_003324.1 + 23797 0.66 0.734685
Target:  5'- gCCUCGGCgAGCuucuuCUUGACGuUGCCGg-- -3'
miRNA:   3'- -GGAGCCG-UCGc----GAGCUGU-AUGGCagc -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.