miRNA display CGI

Results 41 - 47 of 47 are showing below:
Show page: 1 2 3

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
12446	5'	-56.1	NC_003324.1	+	21291	0.66	0.724331
	Target:  5'- aUCUCGGCcGCGUUCGcCGccucGCCGgCGa -3' miRNA:   3'- -GGAGCCGuCGCGAGCuGUa---UGGCaGC- -5'
12446	5'	-56.1	NC_003324.1	+	54491	0.66	0.724331
	Target:  5'- gCC-CGGCAGCGgUCccgggGAguUGCCGUUc -3' miRNA:   3'- -GGaGCCGUCGCgAG-----CUguAUGGCAGc -5'
12446	5'	-56.1	NC_003324.1	+	21864	0.66	0.734685
	Target:  5'- uCCUCGGCGGC-CUUGGCcuuCUucgggGUCGa -3' miRNA:   3'- -GGAGCCGUCGcGAGCUGuauGG-----CAGC- -5'
12446	5'	-56.1	NC_003324.1	+	23797	0.66	0.734685
	Target:  5'- gCCUCGGCgAGCuucuuCUUGACGuUGCCGg-- -3' miRNA:   3'- -GGAGCCG-UCGc----GAGCUGU-AUGGCagc -5'
12446	5'	-56.1	NC_003324.1	+	39676	0.66	0.734685
	Target:  5'- uCCUCGaCAucGUGCUUGAUGUGCCG-Ca -3' miRNA:   3'- -GGAGCcGU--CGCGAGCUGUAUGGCaGc -5'
12446	5'	-56.1	NC_003324.1	+	15116	0.66	0.734685
	Target:  5'- --aUGGCGuccuGCGCcaugaUCGACcUGCCGUCGc -3' miRNA:   3'- ggaGCCGU----CGCG-----AGCUGuAUGGCAGC- -5'
12446	5'	-56.1	NC_003324.1	+	57381	0.66	0.734685
	Target:  5'- gCUCGGCGGagGCgagggCGGCAcgACCGgCGu -3' miRNA:   3'- gGAGCCGUCg-CGa----GCUGUa-UGGCaGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home