miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12446 5' -56.1 NC_003324.1 + 49724 0.69 0.54312
Target:  5'- -aUCGGCAGCGUcgUCGAaGUugCGaUCGu -3'
miRNA:   3'- ggAGCCGUCGCG--AGCUgUAugGC-AGC- -5'
12446 5' -56.1 NC_003324.1 + 50049 0.66 0.692784
Target:  5'- aUCagGGCAGCGCcgaUCGcCAUGCUGaCGa -3'
miRNA:   3'- -GGagCCGUCGCG---AGCuGUAUGGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 51784 0.71 0.433145
Target:  5'- gCCUCGcugauauccuGCAGgCGCUCGACGcgaaCGUCGg -3'
miRNA:   3'- -GGAGC----------CGUC-GCGAGCUGUaug-GCAGC- -5'
12446 5' -56.1 NC_003324.1 + 51810 0.67 0.660733
Target:  5'- gCUUGGC-GCcCUCGGCgAUugCGUCGn -3'
miRNA:   3'- gGAGCCGuCGcGAGCUG-UAugGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 52987 0.66 0.70337
Target:  5'- --gCGGCGGaacucuaGCUCGACAcguaGCgCGUCGa -3'
miRNA:   3'- ggaGCCGUCg------CGAGCUGUa---UG-GCAGC- -5'
12446 5' -56.1 NC_003324.1 + 54491 0.66 0.724331
Target:  5'- gCC-CGGCAGCGgUCccgggGAguUGCCGUUc -3'
miRNA:   3'- -GGaGCCGUCGCgAG-----CUguAUGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 57381 0.66 0.734685
Target:  5'- gCUCGGCGGagGCgagggCGGCAcgACCGgCGu -3'
miRNA:   3'- gGAGCCGUCg-CGa----GCUGUa-UGGCaGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.