miRNA display CGI

Results 41 - 47 of 47 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
12446	5'	-56.1	NC_003324.1	+	49724	0.69	0.54312
	Target:  5'- -aUCGGCAGCGUcgUCGAaGUugCGaUCGu -3' miRNA:   3'- ggAGCCGUCGCG--AGCUgUAugGC-AGC- -5'
12446	5'	-56.1	NC_003324.1	+	50049	0.66	0.692784
	Target:  5'- aUCagGGCAGCGCcgaUCGcCAUGCUGaCGa -3' miRNA:   3'- -GGagCCGUCGCG---AGCuGUAUGGCaGC- -5'
12446	5'	-56.1	NC_003324.1	+	51784	0.71	0.433145
	Target:  5'- gCCUCGcugauauccuGCAGgCGCUCGACGcgaaCGUCGg -3' miRNA:   3'- -GGAGC----------CGUC-GCGAGCUGUaug-GCAGC- -5'
12446	5'	-56.1	NC_003324.1	+	51810	0.67	0.660733
	Target:  5'- gCUUGGC-GCcCUCGGCgAUugCGUCGn -3' miRNA:   3'- gGAGCCGuCGcGAGCUG-UAugGCAGC- -5'
12446	5'	-56.1	NC_003324.1	+	52987	0.66	0.70337
	Target:  5'- --gCGGCGGaacucuaGCUCGACAcguaGCgCGUCGa -3' miRNA:   3'- ggaGCCGUCg------CGAGCUGUa---UG-GCAGC- -5'
12446	5'	-56.1	NC_003324.1	+	54491	0.66	0.724331
	Target:  5'- gCC-CGGCAGCGgUCccgggGAguUGCCGUUc -3' miRNA:   3'- -GGaGCCGUCGCgAG-----CUguAUGGCAGc -5'
12446	5'	-56.1	NC_003324.1	+	57381	0.66	0.734685
	Target:  5'- gCUCGGCGGagGCgagggCGGCAcgACCGgCGu -3' miRNA:   3'- gGAGCCGUCg-CGa----GCUGUa-UGGCaGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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