Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12446 | 5' | -56.1 | NC_003324.1 | + | 49724 | 0.69 | 0.54312 |
Target: 5'- -aUCGGCAGCGUcgUCGAaGUugCGaUCGu -3' miRNA: 3'- ggAGCCGUCGCG--AGCUgUAugGC-AGC- -5' |
|||||||
12446 | 5' | -56.1 | NC_003324.1 | + | 50049 | 0.66 | 0.692784 |
Target: 5'- aUCagGGCAGCGCcgaUCGcCAUGCUGaCGa -3' miRNA: 3'- -GGagCCGUCGCG---AGCuGUAUGGCaGC- -5' |
|||||||
12446 | 5' | -56.1 | NC_003324.1 | + | 51784 | 0.71 | 0.433145 |
Target: 5'- gCCUCGcugauauccuGCAGgCGCUCGACGcgaaCGUCGg -3' miRNA: 3'- -GGAGC----------CGUC-GCGAGCUGUaug-GCAGC- -5' |
|||||||
12446 | 5' | -56.1 | NC_003324.1 | + | 51810 | 0.67 | 0.660733 |
Target: 5'- gCUUGGC-GCcCUCGGCgAUugCGUCGn -3' miRNA: 3'- gGAGCCGuCGcGAGCUG-UAugGCAGC- -5' |
|||||||
12446 | 5' | -56.1 | NC_003324.1 | + | 52987 | 0.66 | 0.70337 |
Target: 5'- --gCGGCGGaacucuaGCUCGACAcguaGCgCGUCGa -3' miRNA: 3'- ggaGCCGUCg------CGAGCUGUa---UG-GCAGC- -5' |
|||||||
12446 | 5' | -56.1 | NC_003324.1 | + | 54491 | 0.66 | 0.724331 |
Target: 5'- gCC-CGGCAGCGgUCccgggGAguUGCCGUUc -3' miRNA: 3'- -GGaGCCGUCGCgAG-----CUguAUGGCAGc -5' |
|||||||
12446 | 5' | -56.1 | NC_003324.1 | + | 57381 | 0.66 | 0.734685 |
Target: 5'- gCUCGGCGGagGCgagggCGGCAcgACCGgCGu -3' miRNA: 3'- gGAGCCGUCg-CGa----GCUGUa-UGGCaGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home