miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12446 5' -56.1 NC_003324.1 + 1991 0.72 0.36181
Target:  5'- --aCGGCuuCGCUCGACGUucucaACCGUCa -3'
miRNA:   3'- ggaGCCGucGCGAGCUGUA-----UGGCAGc -5'
12446 5' -56.1 NC_003324.1 + 43241 0.72 0.396446
Target:  5'- gCUCGGauuGGCGCUCGcucaACAagcucGCCGUCGa -3'
miRNA:   3'- gGAGCCg--UCGCGAGC----UGUa----UGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 13439 0.73 0.322332
Target:  5'- uCCguaCGGCAGCGCgucgcauguuuggucCGGCGcggcUGCCGUCGa -3'
miRNA:   3'- -GGa--GCCGUCGCGa--------------GCUGU----AUGGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 25586 0.75 0.264312
Target:  5'- uCCUCGGCGGUGa-UGACAUAguCUGUCGg -3'
miRNA:   3'- -GGAGCCGUCGCgaGCUGUAU--GGCAGC- -5'
12446 5' -56.1 NC_003324.1 + 22094 0.77 0.199432
Target:  5'- ---aGGCuGCGCUCGACAUGCgccuCGUCGa -3'
miRNA:   3'- ggagCCGuCGCGAGCUGUAUG----GCAGC- -5'
12446 5' -56.1 NC_003324.1 + 44101 0.79 0.137255
Target:  5'- aCCUC-GCAGCGCUCGGCAUGaucCCGgCGg -3'
miRNA:   3'- -GGAGcCGUCGCGAGCUGUAU---GGCaGC- -5'
12446 5' -56.1 NC_003324.1 + 26487 1.11 0.000716
Target:  5'- aCCUCGGCAGCGCUCGACAUACCGUCGa -3'
miRNA:   3'- -GGAGCCGUCGCGAGCUGUAUGGCAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.