miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12451 3' -58.6 NC_003324.1 + 14477 0.75 0.17325
Target:  5'- -aGGCGUuuGCGCGCuCGGUUGCGgCg -3'
miRNA:   3'- agCCGCAggUGUGCGuGUCAGCGCgG- -5'
12451 3' -58.6 NC_003324.1 + 18210 0.71 0.294827
Target:  5'- cCGGCGUCgaaUACACGcCGCuG-CGCGCUa -3'
miRNA:   3'- aGCCGCAG---GUGUGC-GUGuCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 50622 0.66 0.554427
Target:  5'- cUCGGCGUCgaGCAgGUcaacGCGGgugcuggcugCGUGCCa -3'
miRNA:   3'- -AGCCGCAGg-UGUgCG----UGUCa---------GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 47747 0.66 0.554427
Target:  5'- aCGGaacuGUCCA-GCGCAcCGG-CGUGCCa -3'
miRNA:   3'- aGCCg---CAGGUgUGCGU-GUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 40334 0.66 0.564876
Target:  5'- cCGGa--CCGCACGCaaggcgGCAGUCGagcgggaGCCa -3'
miRNA:   3'- aGCCgcaGGUGUGCG------UGUCAGCg------CGG- -5'
12451 3' -58.6 NC_003324.1 + 37993 0.71 0.319837
Target:  5'- -aGGCGgCCAUgccggagcgguugcgGCGCACGGggCGCGUCa -3'
miRNA:   3'- agCCGCaGGUG---------------UGCGUGUCa-GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 31618 0.73 0.242046
Target:  5'- cUGGCGUUgGCAUGCACccacUCGCGCa -3'
miRNA:   3'- aGCCGCAGgUGUGCGUGuc--AGCGCGg -5'
12451 3' -58.6 NC_003324.1 + 21825 0.66 0.569071
Target:  5'- cCGuCGUCCGCcuucugcaucaguuCGCGCAGcCGgGCCu -3'
miRNA:   3'- aGCcGCAGGUGu-------------GCGUGUCaGCgCGG- -5'
12451 3' -58.6 NC_003324.1 + 23406 0.66 0.564876
Target:  5'- cUCGGCuuucucGUUgGC-CGCGuCGGUgGCGCCc -3'
miRNA:   3'- -AGCCG------CAGgUGuGCGU-GUCAgCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 34639 0.66 0.554427
Target:  5'- cUCGGCGUCCAgCAUGUcgaagaGCAc-UGUGCCc -3'
miRNA:   3'- -AGCCGCAGGU-GUGCG------UGUcaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 30262 0.68 0.454085
Target:  5'- aUCGGCGaugaugcgggCCAag-GCACGGUCGCccaaGCCg -3'
miRNA:   3'- -AGCCGCa---------GGUgugCGUGUCAGCG----CGG- -5'
12451 3' -58.6 NC_003324.1 + 23167 0.68 0.447419
Target:  5'- cCGGCGcCCACGguauggucggcgaGCGCGGUaccgcucugcaucgUGCGCCa -3'
miRNA:   3'- aGCCGCaGGUGUg------------CGUGUCA--------------GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 19384 0.68 0.444579
Target:  5'- aUCGaCG-CCG-GCGCGC-GUCGCGCCg -3'
miRNA:   3'- -AGCcGCaGGUgUGCGUGuCAGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 42283 0.69 0.390011
Target:  5'- gCGG-GUCgGCaACGCugAGU-GCGCCg -3'
miRNA:   3'- aGCCgCAGgUG-UGCGugUCAgCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 14467 0.71 0.302021
Target:  5'- aUCGGCGgaCCuuGCugGCACcGUCGCggaaGCCg -3'
miRNA:   3'- -AGCCGCa-GG--UGugCGUGuCAGCG----CGG- -5'
12451 3' -58.6 NC_003324.1 + 23535 0.67 0.52345
Target:  5'- aUCGGUGccCCACAgCGUggcgGCGGgCGCGCUc -3'
miRNA:   3'- -AGCCGCa-GGUGU-GCG----UGUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 30653 0.67 0.52345
Target:  5'- cCGaCG-CCACGgagauagcUGCGCGGaUCGCGCCa -3'
miRNA:   3'- aGCcGCaGGUGU--------GCGUGUC-AGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 19527 0.67 0.533707
Target:  5'- -aGGCGUCCAucagccgcuuCACGCGCAuauaCuCGCCg -3'
miRNA:   3'- agCCGCAGGU----------GUGCGUGUca--GcGCGG- -5'
12451 3' -58.6 NC_003324.1 + 23899 0.67 0.533707
Target:  5'- aUC-GCGUCCGCAgGUuuGCcGUagaGCGCCg -3'
miRNA:   3'- -AGcCGCAGGUGUgCG--UGuCAg--CGCGG- -5'
12451 3' -58.6 NC_003324.1 + 18284 0.67 0.533707
Target:  5'- aUCGGCcgaCGCGCGgGCAaUCGCuGCCc -3'
miRNA:   3'- -AGCCGcagGUGUGCgUGUcAGCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.