miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12451 3' -58.6 NC_003324.1 + 50744 0.66 0.585921
Target:  5'- aUUGGCGcUUCGCAaccgucgcaGCGCAGauguucgUGCGCCu -3'
miRNA:   3'- -AGCCGC-AGGUGUg--------CGUGUCa------GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 34150 0.7 0.332146
Target:  5'- -gGGCGgagCCGCugGCAUuGg-GCGCCg -3'
miRNA:   3'- agCCGCa--GGUGugCGUGuCagCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 18210 0.71 0.294827
Target:  5'- cCGGCGUCgaaUACACGcCGCuG-CGCGCUa -3'
miRNA:   3'- aGCCGCAG---GUGUGC-GUGuCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 52168 0.76 0.140101
Target:  5'- gUCGGCGUCCuuACG-GCAGgccUCGUGCCa -3'
miRNA:   3'- -AGCCGCAGGugUGCgUGUC---AGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 47747 0.66 0.554427
Target:  5'- aCGGaacuGUCCA-GCGCAcCGG-CGUGCCa -3'
miRNA:   3'- aGCCg---CAGGUgUGCGU-GUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 50622 0.66 0.554427
Target:  5'- cUCGGCGUCgaGCAgGUcaacGCGGgugcuggcugCGUGCCa -3'
miRNA:   3'- -AGCCGCAGg-UGUgCG----UGUCa---------GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 15226 0.67 0.513269
Target:  5'- aUCGGCGgcgagCCuuuuCACGUggcGCcguGUCGaCGCCg -3'
miRNA:   3'- -AGCCGCa----GGu---GUGCG---UGu--CAGC-GCGG- -5'
12451 3' -58.6 NC_003324.1 + 29990 0.67 0.513269
Target:  5'- gCGcCGUCCAgCAUGgccaGCAG-CGCGCCg -3'
miRNA:   3'- aGCcGCAGGU-GUGCg---UGUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 42702 0.69 0.41675
Target:  5'- cCGGCG-CCGCGCGaugacuauaaGCAGacgaaguaUCGCGUCa -3'
miRNA:   3'- aGCCGCaGGUGUGCg---------UGUC--------AGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 41767 0.7 0.332146
Target:  5'- aUUGGCGcaucgcuaCCGUugGCACAGUgCGCGUCg -3'
miRNA:   3'- -AGCCGCa-------GGUGugCGUGUCA-GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 47955 0.69 0.381351
Target:  5'- uUCGGCaaagGUCCugACGCcggucagguACGGUUucagcggcaGCGCCg -3'
miRNA:   3'- -AGCCG----CAGGugUGCG---------UGUCAG---------CGCGG- -5'
12451 3' -58.6 NC_003324.1 + 17286 0.68 0.438929
Target:  5'- cUCGGCGcUCAagaACGCcgaaagccgcguccgACAGaCGCGCCa -3'
miRNA:   3'- -AGCCGCaGGUg--UGCG---------------UGUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 15439 0.66 0.585921
Target:  5'- uUCaGCGUCCuCGCGCGCA-UCGaGCa -3'
miRNA:   3'- -AGcCGCAGGuGUGCGUGUcAGCgCGg -5'
12451 3' -58.6 NC_003324.1 + 53528 0.69 0.37282
Target:  5'- cCGGCGUUgAUACGguCuGUCGUGUa -3'
miRNA:   3'- aGCCGCAGgUGUGCguGuCAGCGCGg -5'
12451 3' -58.6 NC_003324.1 + 19466 0.66 0.575377
Target:  5'- aCGGCG-CgACGCGCGCcggcGUCGauCCa -3'
miRNA:   3'- aGCCGCaGgUGUGCGUGu---CAGCgcGG- -5'
12451 3' -58.6 NC_003324.1 + 11717 0.68 0.444579
Target:  5'- aUCGGCGUcagaCCGCcgucguucaaGCGCACGuucaUCGCuGCCg -3'
miRNA:   3'- -AGCCGCA----GGUG----------UGCGUGUc---AGCG-CGG- -5'
12451 3' -58.6 NC_003324.1 + 54018 0.7 0.348016
Target:  5'- gUCGGCGUCUuucugcaggcgGCgaaGCGCACuuGcCGCGCUg -3'
miRNA:   3'- -AGCCGCAGG-----------UG---UGCGUGu-CaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 26104 0.7 0.327489
Target:  5'- cCGGUGacgCCAUugGCGCgcucagucaccccgaAGUCGgGCCu -3'
miRNA:   3'- aGCCGCa--GGUGugCGUG---------------UCAGCgCGG- -5'
12451 3' -58.6 NC_003324.1 + 40334 0.66 0.564876
Target:  5'- cCGGa--CCGCACGCaaggcgGCAGUCGagcgggaGCCa -3'
miRNA:   3'- aGCCgcaGGUGUGCG------UGUCAGCg------CGG- -5'
12451 3' -58.6 NC_003324.1 + 38104 0.67 0.533707
Target:  5'- gUCGGCGgaaugUugACGCGCcccgUGCGCCg -3'
miRNA:   3'- -AGCCGCag---GugUGCGUGuca-GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.