miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12454 5' -53 NC_003324.1 + 6531 0.69 0.693464
Target:  5'- ----aCGGCAGgGUCuGCGAGCUAu- -3'
miRNA:   3'- cauaaGCCGUUgCAGcCGCUCGGUuc -5'
12454 5' -53 NC_003324.1 + 12218 0.68 0.726171
Target:  5'- ----aCGGCGAuguUGUCGGUGAaauucccgGCCGAGg -3'
miRNA:   3'- cauaaGCCGUU---GCAGCCGCU--------CGGUUC- -5'
12454 5' -53 NC_003324.1 + 13163 0.68 0.736897
Target:  5'- ---gUCGGCGGCgGUCGGCG-GCg--- -3'
miRNA:   3'- cauaAGCCGUUG-CAGCCGCuCGguuc -5'
12454 5' -53 NC_003324.1 + 15238 0.7 0.582149
Target:  5'- ----cCGGCGAUGgagaucggCGGCGAGCCu-- -3'
miRNA:   3'- cauaaGCCGUUGCa-------GCCGCUCGGuuc -5'
12454 5' -53 NC_003324.1 + 15973 0.66 0.827106
Target:  5'- ---gUUGGCGACGauaagaugcgCGGCGAuGCCAu- -3'
miRNA:   3'- cauaAGCCGUUGCa---------GCCGCU-CGGUuc -5'
12454 5' -53 NC_003324.1 + 16139 0.67 0.788651
Target:  5'- --cUUCGGUAGCGggGGCcGcGCCAGGc -3'
miRNA:   3'- cauAAGCCGUUGCagCCG-CuCGGUUC- -5'
12454 5' -53 NC_003324.1 + 18791 0.66 0.853767
Target:  5'- ---cUCGGCAACGaUGcGCGGGuCCAu- -3'
miRNA:   3'- cauaAGCCGUUGCaGC-CGCUC-GGUuc -5'
12454 5' -53 NC_003324.1 + 21375 0.68 0.726171
Target:  5'- ----cCGGCGAgG-CGGCGAacgcgGCCGAGa -3'
miRNA:   3'- cauaaGCCGUUgCaGCCGCU-----CGGUUC- -5'
12454 5' -53 NC_003324.1 + 22202 0.66 0.845108
Target:  5'- ----aCGGUGAUGUUGGUGGGCUu-- -3'
miRNA:   3'- cauaaGCCGUUGCAGCCGCUCGGuuc -5'
12454 5' -53 NC_003324.1 + 22242 0.7 0.582149
Target:  5'- ----gCGGCAACGUcuugccgaucgCGGCGAGCUg-- -3'
miRNA:   3'- cauaaGCCGUUGCA-----------GCCGCUCGGuuc -5'
12454 5' -53 NC_003324.1 + 22685 0.71 0.538271
Target:  5'- ---cUCGGCAACG-CGGCaggcAGCCAAa -3'
miRNA:   3'- cauaAGCCGUUGCaGCCGc---UCGGUUc -5'
12454 5' -53 NC_003324.1 + 23176 0.76 0.311149
Target:  5'- ----aCGGUAugGUCGGCGAGCgCGGu -3'
miRNA:   3'- cauaaGCCGUugCAGCCGCUCG-GUUc -5'
12454 5' -53 NC_003324.1 + 23415 0.68 0.747513
Target:  5'- cUcgUUGGCcGCGUCGGUGGcGCCcuGg -3'
miRNA:   3'- cAuaAGCCGuUGCAGCCGCU-CGGuuC- -5'
12454 5' -53 NC_003324.1 + 23779 0.76 0.281133
Target:  5'- -gAUUCGGCGGCGcguucggccUCGGCGAGCUu-- -3'
miRNA:   3'- caUAAGCCGUUGC---------AGCCGCUCGGuuc -5'
12454 5' -53 NC_003324.1 + 26458 0.68 0.704444
Target:  5'- ----aCGGCAAUGUCGGCGAcaUCAAu -3'
miRNA:   3'- cauaaGCCGUUGCAGCCGCUc-GGUUc -5'
12454 5' -53 NC_003324.1 + 27224 0.67 0.768371
Target:  5'- aGUGggCGGcCAACGUCGccaaCGGGCuCAAGa -3'
miRNA:   3'- -CAUaaGCC-GUUGCAGCc---GCUCG-GUUC- -5'
12454 5' -53 NC_003324.1 + 29103 0.67 0.768371
Target:  5'- ---aUCGGUAccGCGUCGaGCGcgcuGCUAAGg -3'
miRNA:   3'- cauaAGCCGU--UGCAGC-CGCu---CGGUUC- -5'
12454 5' -53 NC_003324.1 + 30262 0.72 0.485145
Target:  5'- ---aUCGGCGAUGau-GCGGGCCAAGg -3'
miRNA:   3'- cauaAGCCGUUGCagcCGCUCGGUUC- -5'
12454 5' -53 NC_003324.1 + 30366 0.67 0.788651
Target:  5'- aUGUUCGGCGGCuUgGGCGAccguGCCu-- -3'
miRNA:   3'- cAUAAGCCGUUGcAgCCGCU----CGGuuc -5'
12454 5' -53 NC_003324.1 + 30985 0.72 0.516749
Target:  5'- ----cCGGCGugGUCGGauuGGGCCAGu -3'
miRNA:   3'- cauaaGCCGUugCAGCCg--CUCGGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.