Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12454 | 5' | -53 | NC_003324.1 | + | 53209 | 0.67 | 0.788651 |
Target: 5'- ----gCGGCccuuACgGUCGGgGAGCCAGa -3' miRNA: 3'- cauaaGCCGu---UG-CAGCCgCUCGGUUc -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 50199 | 0.71 | 0.549147 |
Target: 5'- ---aUCaGCGACaaGUCGGCGAGCCu-- -3' miRNA: 3'- cauaAGcCGUUG--CAGCCGCUCGGuuc -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 49991 | 0.7 | 0.582149 |
Target: 5'- -----gGGCAGCGaaGGCGAGCaCGAGc -3' miRNA: 3'- cauaagCCGUUGCagCCGCUCG-GUUC- -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 49724 | 0.67 | 0.768371 |
Target: 5'- ---aUCGGCAGCGUCGucgaaguuGCGAucguuggcgccuGCCAGa -3' miRNA: 3'- cauaAGCCGUUGCAGC--------CGCU------------CGGUUc -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 49398 | 0.66 | 0.827106 |
Target: 5'- -----gGGCAaauacucgaucGCGaUCGGCGAGCCcGGc -3' miRNA: 3'- cauaagCCGU-----------UGC-AGCCGCUCGGuUC- -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 49285 | 0.69 | 0.682424 |
Target: 5'- -cGUUCGGau-CGUCGGCaggaagaucgagGAGCCGAu -3' miRNA: 3'- caUAAGCCguuGCAGCCG------------CUCGGUUc -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 44688 | 0.66 | 0.827106 |
Target: 5'- cGUGgugUUGGCAGCcUCGacGUGGGCCAGa -3' miRNA: 3'- -CAUa--AGCCGUUGcAGC--CGCUCGGUUc -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 44576 | 0.74 | 0.405854 |
Target: 5'- -cGUUCGGCAGCGacaCGGCG-GCgAGGa -3' miRNA: 3'- caUAAGCCGUUGCa--GCCGCuCGgUUC- -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 44090 | 0.66 | 0.845108 |
Target: 5'- ---cUCGGCAugauccCGgCGGC-AGCCGAGg -3' miRNA: 3'- cauaAGCCGUu-----GCaGCCGcUCGGUUC- -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 35463 | 0.86 | 0.065741 |
Target: 5'- ---gUCGGCGAUGUCGGCGAGCguGGg -3' miRNA: 3'- cauaAGCCGUUGCAGCCGCUCGguUC- -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 34450 | 0.66 | 0.827106 |
Target: 5'- ---aUUGGCaAGCGUCGGCGGGa---- -3' miRNA: 3'- cauaAGCCG-UUGCAGCCGCUCgguuc -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 33547 | 0.67 | 0.758009 |
Target: 5'- -cGUUCGGCGucgACGgcuccauaaaauUCGGCGAGCg--- -3' miRNA: 3'- caUAAGCCGU---UGC------------AGCCGCUCGguuc -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 33061 | 0.74 | 0.396525 |
Target: 5'- -gGUUCGGCAuugGCGaCGGCGAGCa--- -3' miRNA: 3'- caUAAGCCGU---UGCaGCCGCUCGguuc -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 32100 | 0.68 | 0.71535 |
Target: 5'- ---cUCGGCucguCGcCGGUGAGgCCGAGu -3' miRNA: 3'- cauaAGCCGuu--GCaGCCGCUC-GGUUC- -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 31799 | 1.08 | 0.001943 |
Target: 5'- cGUAUUCGGCAACGUCGGCGAGCCAAGc -3' miRNA: 3'- -CAUAAGCCGUUGCAGCCGCUCGGUUC- -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 30985 | 0.72 | 0.516749 |
Target: 5'- ----cCGGCGugGUCGGauuGGGCCAGu -3' miRNA: 3'- cauaaGCCGUugCAGCCg--CUCGGUUc -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 30366 | 0.67 | 0.788651 |
Target: 5'- aUGUUCGGCGGCuUgGGCGAccguGCCu-- -3' miRNA: 3'- cAUAAGCCGUUGcAgCCGCU----CGGuuc -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 30262 | 0.72 | 0.485145 |
Target: 5'- ---aUCGGCGAUGau-GCGGGCCAAGg -3' miRNA: 3'- cauaAGCCGUUGCagcCGCUCGGUUC- -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 29103 | 0.67 | 0.768371 |
Target: 5'- ---aUCGGUAccGCGUCGaGCGcgcuGCUAAGg -3' miRNA: 3'- cauaAGCCGU--UGCAGC-CGCu---CGGUUC- -5' |
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12454 | 5' | -53 | NC_003324.1 | + | 27224 | 0.67 | 0.768371 |
Target: 5'- aGUGggCGGcCAACGUCGccaaCGGGCuCAAGa -3' miRNA: 3'- -CAUaaGCC-GUUGCAGCc---GCUCG-GUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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