miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12454 5' -53 NC_003324.1 + 31799 1.08 0.001943
Target:  5'- cGUAUUCGGCAACGUCGGCGAGCCAAGc -3'
miRNA:   3'- -CAUAAGCCGUUGCAGCCGCUCGGUUC- -5'
12454 5' -53 NC_003324.1 + 23415 0.68 0.747513
Target:  5'- cUcgUUGGCcGCGUCGGUGGcGCCcuGg -3'
miRNA:   3'- cAuaAGCCGuUGCAGCCGCU-CGGuuC- -5'
12454 5' -53 NC_003324.1 + 16139 0.67 0.788651
Target:  5'- --cUUCGGUAGCGggGGCcGcGCCAGGc -3'
miRNA:   3'- cauAAGCCGUUGCagCCG-CuCGGUUC- -5'
12454 5' -53 NC_003324.1 + 44688 0.66 0.827106
Target:  5'- cGUGgugUUGGCAGCcUCGacGUGGGCCAGa -3'
miRNA:   3'- -CAUa--AGCCGUUGcAGC--CGCUCGGUUc -5'
12454 5' -53 NC_003324.1 + 49398 0.66 0.827106
Target:  5'- -----gGGCAaauacucgaucGCGaUCGGCGAGCCcGGc -3'
miRNA:   3'- cauaagCCGU-----------UGC-AGCCGCUCGGuUC- -5'
12454 5' -53 NC_003324.1 + 15973 0.66 0.827106
Target:  5'- ---gUUGGCGACGauaagaugcgCGGCGAuGCCAu- -3'
miRNA:   3'- cauaAGCCGUUGCa---------GCCGCU-CGGUuc -5'
12454 5' -53 NC_003324.1 + 34450 0.66 0.827106
Target:  5'- ---aUUGGCaAGCGUCGGCGGGa---- -3'
miRNA:   3'- cauaAGCCG-UUGCAGCCGCUCgguuc -5'
12454 5' -53 NC_003324.1 + 22202 0.66 0.845108
Target:  5'- ----aCGGUGAUGUUGGUGGGCUu-- -3'
miRNA:   3'- cauaaGCCGUUGCAGCCGCUCGGuuc -5'
12454 5' -53 NC_003324.1 + 18791 0.66 0.853767
Target:  5'- ---cUCGGCAACGaUGcGCGGGuCCAu- -3'
miRNA:   3'- cauaAGCCGUUGCaGC-CGCUC-GGUuc -5'
12454 5' -53 NC_003324.1 + 32100 0.68 0.71535
Target:  5'- ---cUCGGCucguCGcCGGUGAGgCCGAGu -3'
miRNA:   3'- cauaAGCCGuu--GCaGCCGCUC-GGUUC- -5'
12454 5' -53 NC_003324.1 + 26458 0.68 0.704444
Target:  5'- ----aCGGCAAUGUCGGCGAcaUCAAu -3'
miRNA:   3'- cauaaGCCGUUGCAGCCGCUc-GGUUc -5'
12454 5' -53 NC_003324.1 + 35463 0.86 0.065741
Target:  5'- ---gUCGGCGAUGUCGGCGAGCguGGg -3'
miRNA:   3'- cauaAGCCGUUGCAGCCGCUCGguUC- -5'
12454 5' -53 NC_003324.1 + 23779 0.76 0.281133
Target:  5'- -gAUUCGGCGGCGcguucggccUCGGCGAGCUu-- -3'
miRNA:   3'- caUAAGCCGUUGC---------AGCCGCUCGGuuc -5'
12454 5' -53 NC_003324.1 + 23176 0.76 0.311149
Target:  5'- ----aCGGUAugGUCGGCGAGCgCGGu -3'
miRNA:   3'- cauaaGCCGUugCAGCCGCUCG-GUUc -5'
12454 5' -53 NC_003324.1 + 44576 0.74 0.405854
Target:  5'- -cGUUCGGCAGCGacaCGGCG-GCgAGGa -3'
miRNA:   3'- caUAAGCCGUUGCa--GCCGCuCGgUUC- -5'
12454 5' -53 NC_003324.1 + 30262 0.72 0.485145
Target:  5'- ---aUCGGCGAUGau-GCGGGCCAAGg -3'
miRNA:   3'- cauaAGCCGUUGCagcCGCUCGGUUC- -5'
12454 5' -53 NC_003324.1 + 50199 0.71 0.549147
Target:  5'- ---aUCaGCGACaaGUCGGCGAGCCu-- -3'
miRNA:   3'- cauaAGcCGUUG--CAGCCGCUCGGuuc -5'
12454 5' -53 NC_003324.1 + 22242 0.7 0.582149
Target:  5'- ----gCGGCAACGUcuugccgaucgCGGCGAGCUg-- -3'
miRNA:   3'- cauaaGCCGUUGCA-----------GCCGCUCGGuuc -5'
12454 5' -53 NC_003324.1 + 6531 0.69 0.693464
Target:  5'- ----aCGGCAGgGUCuGCGAGCUAu- -3'
miRNA:   3'- cauaaGCCGUUgCAGcCGCUCGGUuc -5'
12454 5' -53 NC_003324.1 + 33061 0.74 0.396525
Target:  5'- -gGUUCGGCAuugGCGaCGGCGAGCa--- -3'
miRNA:   3'- caUAAGCCGU---UGCaGCCGCUCGguuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.