Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12454 | 5' | -53 | NC_003324.1 | + | 53209 | 0.67 | 0.788651 |
Target: 5'- ----gCGGCccuuACgGUCGGgGAGCCAGa -3' miRNA: 3'- cauaaGCCGu---UG-CAGCCgCUCGGUUc -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 44090 | 0.66 | 0.845108 |
Target: 5'- ---cUCGGCAugauccCGgCGGC-AGCCGAGg -3' miRNA: 3'- cauaAGCCGUu-----GCaGCCGcUCGGUUC- -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 49285 | 0.69 | 0.682424 |
Target: 5'- -cGUUCGGau-CGUCGGCaggaagaucgagGAGCCGAu -3' miRNA: 3'- caUAAGCCguuGCAGCCG------------CUCGGUUc -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 21375 | 0.68 | 0.726171 |
Target: 5'- ----cCGGCGAgG-CGGCGAacgcgGCCGAGa -3' miRNA: 3'- cauaaGCCGUUgCaGCCGCU-----CGGUUC- -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 13163 | 0.68 | 0.736897 |
Target: 5'- ---gUCGGCGGCgGUCGGCG-GCg--- -3' miRNA: 3'- cauaAGCCGUUG-CAGCCGCuCGguuc -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 33547 | 0.67 | 0.758009 |
Target: 5'- -cGUUCGGCGucgACGgcuccauaaaauUCGGCGAGCg--- -3' miRNA: 3'- caUAAGCCGU---UGC------------AGCCGCUCGguuc -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 22685 | 0.71 | 0.538271 |
Target: 5'- ---cUCGGCAACG-CGGCaggcAGCCAAa -3' miRNA: 3'- cauaAGCCGUUGCaGCCGc---UCGGUUc -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 49991 | 0.7 | 0.582149 |
Target: 5'- -----gGGCAGCGaaGGCGAGCaCGAGc -3' miRNA: 3'- cauaagCCGUUGCagCCGCUCG-GUUC- -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 12218 | 0.68 | 0.726171 |
Target: 5'- ----aCGGCGAuguUGUCGGUGAaauucccgGCCGAGg -3' miRNA: 3'- cauaaGCCGUU---GCAGCCGCU--------CGGUUC- -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 27224 | 0.67 | 0.768371 |
Target: 5'- aGUGggCGGcCAACGUCGccaaCGGGCuCAAGa -3' miRNA: 3'- -CAUaaGCC-GUUGCAGCc---GCUCG-GUUC- -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 29103 | 0.67 | 0.768371 |
Target: 5'- ---aUCGGUAccGCGUCGaGCGcgcuGCUAAGg -3' miRNA: 3'- cauaAGCCGU--UGCAGC-CGCu---CGGUUC- -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 30985 | 0.72 | 0.516749 |
Target: 5'- ----cCGGCGugGUCGGauuGGGCCAGu -3' miRNA: 3'- cauaaGCCGUugCAGCCg--CUCGGUUc -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 49724 | 0.67 | 0.768371 |
Target: 5'- ---aUCGGCAGCGUCGucgaaguuGCGAucguuggcgccuGCCAGa -3' miRNA: 3'- cauaAGCCGUUGCAGC--------CGCU------------CGGUUc -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 15238 | 0.7 | 0.582149 |
Target: 5'- ----cCGGCGAUGgagaucggCGGCGAGCCu-- -3' miRNA: 3'- cauaaGCCGUUGCa-------GCCGCUCGGuuc -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 33061 | 0.74 | 0.396525 |
Target: 5'- -gGUUCGGCAuugGCGaCGGCGAGCa--- -3' miRNA: 3'- caUAAGCCGU---UGCaGCCGCUCGguuc -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 30366 | 0.67 | 0.788651 |
Target: 5'- aUGUUCGGCGGCuUgGGCGAccguGCCu-- -3' miRNA: 3'- cAUAAGCCGUUGcAgCCGCU----CGGuuc -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 49398 | 0.66 | 0.827106 |
Target: 5'- -----gGGCAaauacucgaucGCGaUCGGCGAGCCcGGc -3' miRNA: 3'- cauaagCCGU-----------UGC-AGCCGCUCGGuUC- -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 44688 | 0.66 | 0.827106 |
Target: 5'- cGUGgugUUGGCAGCcUCGacGUGGGCCAGa -3' miRNA: 3'- -CAUa--AGCCGUUGcAGC--CGCUCGGUUc -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 16139 | 0.67 | 0.788651 |
Target: 5'- --cUUCGGUAGCGggGGCcGcGCCAGGc -3' miRNA: 3'- cauAAGCCGUUGCagCCG-CuCGGUUC- -5' |
|||||||
12454 | 5' | -53 | NC_003324.1 | + | 23415 | 0.68 | 0.747513 |
Target: 5'- cUcgUUGGCcGCGUCGGUGGcGCCcuGg -3' miRNA: 3'- cAuaAGCCGuUGCAGCCGCU-CGGuuC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home