miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12469 5' -52.7 NC_003324.1 + 17168 0.66 0.896479
Target:  5'- aGCGAUUGacgaggcGCUggcgcgucUGUCGGACG-CGGCu -3'
miRNA:   3'- gCGCUAGCa------UGA--------ACGGCUUGCuGCCG- -5'
12469 5' -52.7 NC_003324.1 + 11567 0.66 0.894361
Target:  5'- gGCGAgcagcCGaUGCUgcucccgcggcuccUGCCGGagacugguGCGACGGCn -3'
miRNA:   3'- gCGCUa----GC-AUGA--------------ACGGCU--------UGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 13305 0.66 0.887128
Target:  5'- -aCGAUCGggac-GCCGAAaagcuugaggugcuCGACGGCa -3'
miRNA:   3'- gcGCUAGCaugaaCGGCUU--------------GCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 2679 0.66 0.884908
Target:  5'- gCGCGGUgGccGCUucggcaagggcacgaUGUCG-GCGGCGGCa -3'
miRNA:   3'- -GCGCUAgCa-UGA---------------ACGGCuUGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 21910 0.66 0.881911
Target:  5'- gCGCGA----ACUgaUGCagaaggCGGACGACGGCg -3'
miRNA:   3'- -GCGCUagcaUGA--ACG------GCUUGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 49027 0.66 0.881911
Target:  5'- uGCcg-CG-AC-UGCCGAagaaGCGACGGCc -3'
miRNA:   3'- gCGcuaGCaUGaACGGCU----UGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 19964 0.66 0.874239
Target:  5'- gCGCGuUgGUugUgaaGUCGAuuAUGGCGGCg -3'
miRNA:   3'- -GCGCuAgCAugAa--CGGCU--UGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 30526 0.66 0.874239
Target:  5'- gGCGAccuUCGcUGCcgcUGCCGcuGCGACGcGCu -3'
miRNA:   3'- gCGCU---AGC-AUGa--ACGGCu-UGCUGC-CG- -5'
12469 5' -52.7 NC_003324.1 + 51630 0.66 0.874239
Target:  5'- uGCGAaCGccgUUGCCGcaaGACGGCa -3'
miRNA:   3'- gCGCUaGCaugAACGGCuugCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 5349 0.66 0.874239
Target:  5'- aGCGAgaUCGaggauaucGCcUGCCGcugguGCGGCGGCc -3'
miRNA:   3'- gCGCU--AGCa-------UGaACGGCu----UGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 27836 0.66 0.874239
Target:  5'- cCGCuGGU-GUAgUUGUCGAGguaGGCGGCg -3'
miRNA:   3'- -GCG-CUAgCAUgAACGGCUUg--CUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 17799 0.66 0.866318
Target:  5'- gGCGAUCugGUAgcgUGCCucACGGCGcGCa -3'
miRNA:   3'- gCGCUAG--CAUga-ACGGcuUGCUGC-CG- -5'
12469 5' -52.7 NC_003324.1 + 41322 0.66 0.866318
Target:  5'- uCGCGAUC--ACgaUGUCGAACGGCcucgaaaucGGCg -3'
miRNA:   3'- -GCGCUAGcaUGa-ACGGCUUGCUG---------CCG- -5'
12469 5' -52.7 NC_003324.1 + 27641 0.66 0.866318
Target:  5'- uCGCGGaucUCGaaccGCUUGCCGuucGCGACcaccucaugcguGGCg -3'
miRNA:   3'- -GCGCU---AGCa---UGAACGGCu--UGCUG------------CCG- -5'
12469 5' -52.7 NC_003324.1 + 18491 0.66 0.866318
Target:  5'- uGCGAgcUCGU---UGgCGAGCGucACGGCg -3'
miRNA:   3'- gCGCU--AGCAugaACgGCUUGC--UGCCG- -5'
12469 5' -52.7 NC_003324.1 + 49972 0.66 0.858153
Target:  5'- gGCGAUCGgcGC-UGCCcuGAUGGgGGCa -3'
miRNA:   3'- gCGCUAGCa-UGaACGGc-UUGCUgCCG- -5'
12469 5' -52.7 NC_003324.1 + 11348 0.66 0.855657
Target:  5'- aCGCGGUCGcUGauguugucaaucagUUUGCCGca-GAUGGCu -3'
miRNA:   3'- -GCGCUAGC-AU--------------GAACGGCuugCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 23261 0.67 0.849752
Target:  5'- aGCGGUacCGcGCUcGCCGAccauacCGugGGCg -3'
miRNA:   3'- gCGCUA--GCaUGAaCGGCUu-----GCugCCG- -5'
12469 5' -52.7 NC_003324.1 + 19547 0.67 0.849752
Target:  5'- aCGCGcAUa-UACUcGCCGA-CGGCGGUc -3'
miRNA:   3'- -GCGC-UAgcAUGAaCGGCUuGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 1888 0.67 0.841123
Target:  5'- cCGU--UCGUGCUU-CCGAACGguaGGCa -3'
miRNA:   3'- -GCGcuAGCAUGAAcGGCUUGCug-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.