miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12472 5' -56.7 NC_003324.1 + 49048 0.66 0.629136
Target:  5'- ----cCCGCggcGGCGGGGCAaucCAUCCg -3'
miRNA:   3'- ccguuGGCGa--CCGCUCCGUa--GUAGGg -5'
12472 5' -56.7 NC_003324.1 + 47071 0.66 0.629136
Target:  5'- aGGCAGCC-Cga--GGGGCGUUAUCgCCg -3'
miRNA:   3'- -CCGUUGGcGaccgCUCCGUAGUAG-GG- -5'
12472 5' -56.7 NC_003324.1 + 25629 0.66 0.629136
Target:  5'- aGGCGGCCaGaaGGCGAaauuccggGGCAaCGUCgCCg -3'
miRNA:   3'- -CCGUUGG-CgaCCGCU--------CCGUaGUAG-GG- -5'
12472 5' -56.7 NC_003324.1 + 24991 0.66 0.650836
Target:  5'- gGGCGGCgUGCUGGCGAuGGUGgugaCAaaCCg -3'
miRNA:   3'- -CCGUUG-GCGACCGCU-CCGUa---GUagGG- -5'
12472 5' -56.7 NC_003324.1 + 7844 0.66 0.629136
Target:  5'- uGCGAUCGCgccucccuGCGAGGCGUgcUCUCg -3'
miRNA:   3'- cCGUUGGCGac------CGCUCCGUAguAGGG- -5'
12472 5' -56.7 NC_003324.1 + 14991 0.66 0.661665
Target:  5'- cGGCAuguuguugACCGCgu-CGAGcGCGUCG-CCCu -3'
miRNA:   3'- -CCGU--------UGGCGaccGCUC-CGUAGUaGGG- -5'
12472 5' -56.7 NC_003324.1 + 57008 0.66 0.67678
Target:  5'- cGCucuAUCGCUGGCGAGGCccgaaaggcggguggAUCuacgacgCUCg -3'
miRNA:   3'- cCGu--UGGCGACCGCUCCG---------------UAGua-----GGG- -5'
12472 5' -56.7 NC_003324.1 + 524 0.66 0.66599
Target:  5'- cGGCAgcucgaccaucuACCGCUGGauCGAGGaagggacguuUCCCg -3'
miRNA:   3'- -CCGU------------UGGCGACC--GCUCCguagu-----AGGG- -5'
12472 5' -56.7 NC_003324.1 + 13618 0.66 0.650836
Target:  5'- cGCGAagaCGCgcaGGCGAucGGCAUCcgAUCCg -3'
miRNA:   3'- cCGUUg--GCGa--CCGCU--CCGUAG--UAGGg -5'
12472 5' -56.7 NC_003324.1 + 36717 0.66 0.650836
Target:  5'- cGG-AugCGCUGGCGcuGGUagccagugacAUCAUCCg -3'
miRNA:   3'- -CCgUugGCGACCGCu-CCG----------UAGUAGGg -5'
12472 5' -56.7 NC_003324.1 + 29472 0.67 0.585839
Target:  5'- cGGCcgccuGGCUGCgGGCGcgucGGGCG-CAUCUCg -3'
miRNA:   3'- -CCG-----UUGGCGaCCGC----UCCGUaGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 23347 0.67 0.585839
Target:  5'- aGCucgUCGC-GGCG-GGCGUCAuugUCCCa -3'
miRNA:   3'- cCGuu-GGCGaCCGCuCCGUAGU---AGGG- -5'
12472 5' -56.7 NC_003324.1 + 18268 0.67 0.579383
Target:  5'- cGCGACCGCUGacggaaucggccgacGCGcGGGCAaUCGcugCCCc -3'
miRNA:   3'- cCGUUGGCGAC---------------CGC-UCCGU-AGUa--GGG- -5'
12472 5' -56.7 NC_003324.1 + 25431 0.67 0.568659
Target:  5'- aGGCGuugcgcagGCCGCcccagccgacccacuUGGCGA-GCAugcuuugcUCGUCCCg -3'
miRNA:   3'- -CCGU--------UGGCG---------------ACCGCUcCGU--------AGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 13161 0.67 0.582609
Target:  5'- cGGCGGCgGUcGGCGGcGGCGguaccggcugcaaaUCGUCaCCg -3'
miRNA:   3'- -CCGUUGgCGaCCGCU-CCGU--------------AGUAG-GG- -5'
12472 5' -56.7 NC_003324.1 + 5494 0.67 0.607446
Target:  5'- cGGC-GCCGCaGGUGcGGGCGcCAUCUUc -3'
miRNA:   3'- -CCGuUGGCGaCCGC-UCCGUaGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 20806 0.67 0.618285
Target:  5'- cGGCgGACCGUguUGGUGAcGcGCAUCGccgUUCCg -3'
miRNA:   3'- -CCG-UUGGCG--ACCGCU-C-CGUAGU---AGGG- -5'
12472 5' -56.7 NC_003324.1 + 34452 0.68 0.500485
Target:  5'- uGGCAAgCGUcGGCGGGauuucgcgcuucuGCGUCGUCUUg -3'
miRNA:   3'- -CCGUUgGCGaCCGCUC-------------CGUAGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 9859 0.68 0.522163
Target:  5'- aGGgGGuCCGCUGGcCGuuacGcGCAUaCAUCCCa -3'
miRNA:   3'- -CCgUU-GGCGACC-GCu---C-CGUA-GUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 40472 0.68 0.55373
Target:  5'- aGGCGAagGCcGGUGAGGUuuuUCAcCCCu -3'
miRNA:   3'- -CCGUUggCGaCCGCUCCGu--AGUaGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.