Results 21 - 40 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 31841 | 0.69 | 0.481222 |
Target: 5'- cGGCAGgCGUUGGCGcccccaguucaAGGCAUCGg--- -3' miRNA: 3'- -CCGUUgGCGACCGC-----------UCCGUAGUaggg -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 42154 | 0.69 | 0.495382 |
Target: 5'- aGGCucguuGCCGUaauccgugcgcuugaUGGCacguGGCAUCGUCCg -3' miRNA: 3'- -CCGu----UGGCG---------------ACCGcu--CCGUAGUAGGg -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 16075 | 0.69 | 0.481222 |
Target: 5'- uGCGAagGCUGGUGAuGGCAUCG-CCg -3' miRNA: 3'- cCGUUggCGACCGCU-CCGUAGUaGGg -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 35196 | 0.69 | 0.481222 |
Target: 5'- cGGCGACggCGCUGGCGAcgacggaaaGGCAgaUgAUgCCa -3' miRNA: 3'- -CCGUUG--GCGACCGCU---------CCGU--AgUAgGG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 53362 | 0.69 | 0.461341 |
Target: 5'- --aAGCCGCgaccGGCGGGcGCgAUCAUUCCu -3' miRNA: 3'- ccgUUGGCGa---CCGCUC-CG-UAGUAGGG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 21759 | 0.69 | 0.471228 |
Target: 5'- gGGCu-CUGCagGGCGAGGaacUCGUCCg -3' miRNA: 3'- -CCGuuGGCGa-CCGCUCCgu-AGUAGGg -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 26155 | 0.69 | 0.471228 |
Target: 5'- ---cGCUGCUGGCGGccuGCAUCAUUCUg -3' miRNA: 3'- ccguUGGCGACCGCUc--CGUAGUAGGG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 31611 | 0.69 | 0.471228 |
Target: 5'- -aUAACgGCUGGCGuuGGCAUgCA-CCCa -3' miRNA: 3'- ccGUUGgCGACCGCu-CCGUA-GUaGGG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 35618 | 0.69 | 0.451565 |
Target: 5'- cGGCuuCUGCUGcGCGcaGCAUCAUCUg -3' miRNA: 3'- -CCGuuGGCGAC-CGCucCGUAGUAGGg -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 27832 | 0.7 | 0.440943 |
Target: 5'- -cCAGCCGCUGGUGuaguugucgagguAGGCGgcgcgcgcuUCGUCCUc -3' miRNA: 3'- ccGUUGGCGACCGC-------------UCCGU---------AGUAGGG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 8343 | 0.7 | 0.404468 |
Target: 5'- cGGUGACCGUcGGCGGGGagcugCGUCUg -3' miRNA: 3'- -CCGUUGGCGaCCGCUCCgua--GUAGGg -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 23555 | 0.7 | 0.395426 |
Target: 5'- cGGCGGgCGCgcucGGCGAcGGUAcauccaCAUCCCa -3' miRNA: 3'- -CCGUUgGCGa---CCGCU-CCGUa-----GUAGGG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 43201 | 0.7 | 0.413638 |
Target: 5'- cGGCAACCuGCgGGacuuuGGCAUUAUgCCCg -3' miRNA: 3'- -CCGUUGG-CGaCCgcu--CCGUAGUA-GGG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 12994 | 0.71 | 0.369097 |
Target: 5'- cGCuguucGCgGCUGGCGAucugcagggcGGCAUCAacgCCCg -3' miRNA: 3'- cCGu----UGgCGACCGCU----------CCGUAGUa--GGG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 24586 | 0.71 | 0.352224 |
Target: 5'- gGGCGACCaGCgcaGGaucauCGGGGCcguacAUCGUCCCa -3' miRNA: 3'- -CCGUUGG-CGa--CC-----GCUCCG-----UAGUAGGG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 18209 | 0.71 | 0.343995 |
Target: 5'- cGGCGucgaauacacGCCGCUGcGCGcuaaggucauGGGgGUCAUCUCg -3' miRNA: 3'- -CCGU----------UGGCGAC-CGC----------UCCgUAGUAGGG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 32522 | 0.72 | 0.304199 |
Target: 5'- -cCAAUCGCggGGCGAGGCAgcgggagagcuuuUCGUCuCCg -3' miRNA: 3'- ccGUUGGCGa-CCGCUCCGU-------------AGUAG-GG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 26182 | 0.73 | 0.290305 |
Target: 5'- cGGCGGucUCGCU-GCGGGGCugcgucugcGUCGUCCCc -3' miRNA: 3'- -CCGUU--GGCGAcCGCUCCG---------UAGUAGGG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 16161 | 0.73 | 0.283194 |
Target: 5'- aGGC-AUCGCUGGCaccGAGGCGggcaccgCAgcUCCCg -3' miRNA: 3'- -CCGuUGGCGACCG---CUCCGUa------GU--AGGG- -5' |
|||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 30352 | 0.74 | 0.256128 |
Target: 5'- gGGCGACCGUgccuUGGCcc-GCAUCAUCgCCg -3' miRNA: 3'- -CCGUUGGCG----ACCGcucCGUAGUAG-GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home