Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 24586 | 0.71 | 0.352224 |
Target: 5'- gGGCGACCaGCgcaGGaucauCGGGGCcguacAUCGUCCCa -3' miRNA: 3'- -CCGUUGG-CGa--CC-----GCUCCG-----UAGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 12994 | 0.71 | 0.369097 |
Target: 5'- cGCuguucGCgGCUGGCGAucugcagggcGGCAUCAacgCCCg -3' miRNA: 3'- cCGu----UGgCGACCGCU----------CCGUAGUa--GGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 23555 | 0.7 | 0.395426 |
Target: 5'- cGGCGGgCGCgcucGGCGAcGGUAcauccaCAUCCCa -3' miRNA: 3'- -CCGUUgGCGa---CCGCU-CCGUa-----GUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 8343 | 0.7 | 0.404468 |
Target: 5'- cGGUGACCGUcGGCGGGGagcugCGUCUg -3' miRNA: 3'- -CCGUUGGCGaCCGCUCCgua--GUAGGg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 27832 | 0.7 | 0.440943 |
Target: 5'- -cCAGCCGCUGGUGuaguugucgagguAGGCGgcgcgcgcuUCGUCCUc -3' miRNA: 3'- ccGUUGGCGACCGC-------------UCCGU---------AGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 35618 | 0.69 | 0.451565 |
Target: 5'- cGGCuuCUGCUGcGCGcaGCAUCAUCUg -3' miRNA: 3'- -CCGuuGGCGAC-CGCucCGUAGUAGGg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 9859 | 0.68 | 0.522163 |
Target: 5'- aGGgGGuCCGCUGGcCGuuacGcGCAUaCAUCCCa -3' miRNA: 3'- -CCgUU-GGCGACC-GCu---C-CGUA-GUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 42154 | 0.69 | 0.495382 |
Target: 5'- aGGCucguuGCCGUaauccgugcgcuugaUGGCacguGGCAUCGUCCg -3' miRNA: 3'- -CCGu----UGGCG---------------ACCGcu--CCGUAGUAGGg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 16075 | 0.69 | 0.481222 |
Target: 5'- uGCGAagGCUGGUGAuGGCAUCG-CCg -3' miRNA: 3'- cCGUUggCGACCGCU-CCGUAGUaGGg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 35196 | 0.69 | 0.481222 |
Target: 5'- cGGCGACggCGCUGGCGAcgacggaaaGGCAgaUgAUgCCa -3' miRNA: 3'- -CCGUUG--GCGACCGCU---------CCGU--AgUAgGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 53362 | 0.69 | 0.461341 |
Target: 5'- --aAGCCGCgaccGGCGGGcGCgAUCAUUCCu -3' miRNA: 3'- ccgUUGGCGa---CCGCUC-CG-UAGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 31841 | 0.69 | 0.481222 |
Target: 5'- cGGCAGgCGUUGGCGcccccaguucaAGGCAUCGg--- -3' miRNA: 3'- -CCGUUgGCGACCGC-----------UCCGUAGUaggg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 40472 | 0.68 | 0.55373 |
Target: 5'- aGGCGAagGCcGGUGAGGUuuuUCAcCCCu -3' miRNA: 3'- -CCGUUggCGaCCGCUCCGu--AGUaGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 13161 | 0.67 | 0.582609 |
Target: 5'- cGGCGGCgGUcGGCGGcGGCGguaccggcugcaaaUCGUCaCCg -3' miRNA: 3'- -CCGUUGgCGaCCGCU-CCGU--------------AGUAG-GG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 5494 | 0.67 | 0.607446 |
Target: 5'- cGGC-GCCGCaGGUGcGGGCGcCAUCUUc -3' miRNA: 3'- -CCGuUGGCGaCCGC-UCCGUaGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 47071 | 0.66 | 0.629136 |
Target: 5'- aGGCAGCC-Cga--GGGGCGUUAUCgCCg -3' miRNA: 3'- -CCGUUGGcGaccgCUCCGUAGUAG-GG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 25629 | 0.66 | 0.629136 |
Target: 5'- aGGCGGCCaGaaGGCGAaauuccggGGCAaCGUCgCCg -3' miRNA: 3'- -CCGUUGG-CgaCCGCU--------CCGUaGUAG-GG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 7844 | 0.66 | 0.629136 |
Target: 5'- uGCGAUCGCgccucccuGCGAGGCGUgcUCUCg -3' miRNA: 3'- cCGUUGGCGac------CGCUCCGUAguAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 24991 | 0.66 | 0.650836 |
Target: 5'- gGGCGGCgUGCUGGCGAuGGUGgugaCAaaCCg -3' miRNA: 3'- -CCGUUG-GCGACCGCU-CCGUa---GUagGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 31311 | 0.8 | 0.099995 |
Target: 5'- cGGCGGCgcuggCGCUGGCGGGGgCAUCGUCa- -3' miRNA: 3'- -CCGUUG-----GCGACCGCUCC-GUAGUAGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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