Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 25629 | 0.66 | 0.629136 |
Target: 5'- aGGCGGCCaGaaGGCGAaauuccggGGCAaCGUCgCCg -3' miRNA: 3'- -CCGUUGG-CgaCCGCU--------CCGUaGUAG-GG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 26155 | 0.69 | 0.471228 |
Target: 5'- ---cGCUGCUGGCGGccuGCAUCAUUCUg -3' miRNA: 3'- ccguUGGCGACCGCUc--CGUAGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 26182 | 0.73 | 0.290305 |
Target: 5'- cGGCGGucUCGCU-GCGGGGCugcgucugcGUCGUCCCc -3' miRNA: 3'- -CCGUU--GGCGAcCGCUCCG---------UAGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 27832 | 0.7 | 0.440943 |
Target: 5'- -cCAGCCGCUGGUGuaguugucgagguAGGCGgcgcgcgcuUCGUCCUc -3' miRNA: 3'- ccGUUGGCGACCGC-------------UCCGU---------AGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 29472 | 0.67 | 0.585839 |
Target: 5'- cGGCcgccuGGCUGCgGGCGcgucGGGCG-CAUCUCg -3' miRNA: 3'- -CCG-----UUGGCGaCCGC----UCCGUaGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 30352 | 0.74 | 0.256128 |
Target: 5'- gGGCGACCGUgccuUGGCcc-GCAUCAUCgCCg -3' miRNA: 3'- -CCGUUGGCG----ACCGcucCGUAGUAG-GG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 31311 | 0.8 | 0.099995 |
Target: 5'- cGGCGGCgcuggCGCUGGCGGGGgCAUCGUCa- -3' miRNA: 3'- -CCGUUG-----GCGACCGCUCC-GUAGUAGgg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 31611 | 0.69 | 0.471228 |
Target: 5'- -aUAACgGCUGGCGuuGGCAUgCA-CCCa -3' miRNA: 3'- ccGUUGgCGACCGCu-CCGUA-GUaGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 31841 | 0.69 | 0.481222 |
Target: 5'- cGGCAGgCGUUGGCGcccccaguucaAGGCAUCGg--- -3' miRNA: 3'- -CCGUUgGCGACCGC-----------UCCGUAGUaggg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 32522 | 0.72 | 0.304199 |
Target: 5'- -cCAAUCGCggGGCGAGGCAgcgggagagcuuuUCGUCuCCg -3' miRNA: 3'- ccGUUGGCGa-CCGCUCCGU-------------AGUAG-GG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 34150 | 0.74 | 0.224155 |
Target: 5'- gGGCGgaGCCGCUGGCauugggcgccguGGGUAUCAUUCUa -3' miRNA: 3'- -CCGU--UGGCGACCGc-----------UCCGUAGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 34452 | 0.68 | 0.500485 |
Target: 5'- uGGCAAgCGUcGGCGGGauuucgcgcuucuGCGUCGUCUUg -3' miRNA: 3'- -CCGUUgGCGaCCGCUC-------------CGUAGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 35196 | 0.69 | 0.481222 |
Target: 5'- cGGCGACggCGCUGGCGAcgacggaaaGGCAgaUgAUgCCa -3' miRNA: 3'- -CCGUUG--GCGACCGCU---------CCGU--AgUAgGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 35618 | 0.69 | 0.451565 |
Target: 5'- cGGCuuCUGCUGcGCGcaGCAUCAUCUg -3' miRNA: 3'- -CCGuuGGCGAC-CGCucCGUAGUAGGg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 36717 | 0.66 | 0.650836 |
Target: 5'- cGG-AugCGCUGGCGcuGGUagccagugacAUCAUCCg -3' miRNA: 3'- -CCgUugGCGACCGCu-CCG----------UAGUAGGg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 40472 | 0.68 | 0.55373 |
Target: 5'- aGGCGAagGCcGGUGAGGUuuuUCAcCCCu -3' miRNA: 3'- -CCGUUggCGaCCGCUCCGu--AGUaGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 42154 | 0.69 | 0.495382 |
Target: 5'- aGGCucguuGCCGUaauccgugcgcuugaUGGCacguGGCAUCGUCCg -3' miRNA: 3'- -CCGu----UGGCG---------------ACCGcu--CCGUAGUAGGg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 42691 | 1.15 | 0.000306 |
Target: 5'- cGGCAACCGCUGGCGAGGCAUCAUCCCa -3' miRNA: 3'- -CCGUUGGCGACCGCUCCGUAGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 42917 | 0.75 | 0.197712 |
Target: 5'- gGGCGACCaUUGGCGGucacugcgccGGCGgucUCGUCCCa -3' miRNA: 3'- -CCGUUGGcGACCGCU----------CCGU---AGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 43047 | 0.83 | 0.058372 |
Target: 5'- cGGUAACgGUUcGCGAGGUGUCAUCCCa -3' miRNA: 3'- -CCGUUGgCGAcCGCUCCGUAGUAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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