miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12472 5' -56.7 NC_003324.1 + 524 0.66 0.66599
Target:  5'- cGGCAgcucgaccaucuACCGCUGGauCGAGGaagggacguuUCCCg -3'
miRNA:   3'- -CCGU------------UGGCGACC--GCUCCguagu-----AGGG- -5'
12472 5' -56.7 NC_003324.1 + 5494 0.67 0.607446
Target:  5'- cGGC-GCCGCaGGUGcGGGCGcCAUCUUc -3'
miRNA:   3'- -CCGuUGGCGaCCGC-UCCGUaGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 7844 0.66 0.629136
Target:  5'- uGCGAUCGCgccucccuGCGAGGCGUgcUCUCg -3'
miRNA:   3'- cCGUUGGCGac------CGCUCCGUAguAGGG- -5'
12472 5' -56.7 NC_003324.1 + 8343 0.7 0.404468
Target:  5'- cGGUGACCGUcGGCGGGGagcugCGUCUg -3'
miRNA:   3'- -CCGUUGGCGaCCGCUCCgua--GUAGGg -5'
12472 5' -56.7 NC_003324.1 + 9859 0.68 0.522163
Target:  5'- aGGgGGuCCGCUGGcCGuuacGcGCAUaCAUCCCa -3'
miRNA:   3'- -CCgUU-GGCGACC-GCu---C-CGUA-GUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 12994 0.71 0.369097
Target:  5'- cGCuguucGCgGCUGGCGAucugcagggcGGCAUCAacgCCCg -3'
miRNA:   3'- cCGu----UGgCGACCGCU----------CCGUAGUa--GGG- -5'
12472 5' -56.7 NC_003324.1 + 13161 0.67 0.582609
Target:  5'- cGGCGGCgGUcGGCGGcGGCGguaccggcugcaaaUCGUCaCCg -3'
miRNA:   3'- -CCGUUGgCGaCCGCU-CCGU--------------AGUAG-GG- -5'
12472 5' -56.7 NC_003324.1 + 13618 0.66 0.650836
Target:  5'- cGCGAagaCGCgcaGGCGAucGGCAUCcgAUCCg -3'
miRNA:   3'- cCGUUg--GCGa--CCGCU--CCGUAG--UAGGg -5'
12472 5' -56.7 NC_003324.1 + 14991 0.66 0.661665
Target:  5'- cGGCAuguuguugACCGCgu-CGAGcGCGUCG-CCCu -3'
miRNA:   3'- -CCGU--------UGGCGaccGCUC-CGUAGUaGGG- -5'
12472 5' -56.7 NC_003324.1 + 16075 0.69 0.481222
Target:  5'- uGCGAagGCUGGUGAuGGCAUCG-CCg -3'
miRNA:   3'- cCGUUggCGACCGCU-CCGUAGUaGGg -5'
12472 5' -56.7 NC_003324.1 + 16161 0.73 0.283194
Target:  5'- aGGC-AUCGCUGGCaccGAGGCGggcaccgCAgcUCCCg -3'
miRNA:   3'- -CCGuUGGCGACCG---CUCCGUa------GU--AGGG- -5'
12472 5' -56.7 NC_003324.1 + 18209 0.71 0.343995
Target:  5'- cGGCGucgaauacacGCCGCUGcGCGcuaaggucauGGGgGUCAUCUCg -3'
miRNA:   3'- -CCGU----------UGGCGAC-CGC----------UCCgUAGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 18268 0.67 0.579383
Target:  5'- cGCGACCGCUGacggaaucggccgacGCGcGGGCAaUCGcugCCCc -3'
miRNA:   3'- cCGUUGGCGAC---------------CGC-UCCGU-AGUa--GGG- -5'
12472 5' -56.7 NC_003324.1 + 20806 0.67 0.618285
Target:  5'- cGGCgGACCGUguUGGUGAcGcGCAUCGccgUUCCg -3'
miRNA:   3'- -CCG-UUGGCG--ACCGCU-C-CGUAGU---AGGG- -5'
12472 5' -56.7 NC_003324.1 + 21759 0.69 0.471228
Target:  5'- gGGCu-CUGCagGGCGAGGaacUCGUCCg -3'
miRNA:   3'- -CCGuuGGCGa-CCGCUCCgu-AGUAGGg -5'
12472 5' -56.7 NC_003324.1 + 23347 0.67 0.585839
Target:  5'- aGCucgUCGC-GGCG-GGCGUCAuugUCCCa -3'
miRNA:   3'- cCGuu-GGCGaCCGCuCCGUAGU---AGGG- -5'
12472 5' -56.7 NC_003324.1 + 23555 0.7 0.395426
Target:  5'- cGGCGGgCGCgcucGGCGAcGGUAcauccaCAUCCCa -3'
miRNA:   3'- -CCGUUgGCGa---CCGCU-CCGUa-----GUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 24586 0.71 0.352224
Target:  5'- gGGCGACCaGCgcaGGaucauCGGGGCcguacAUCGUCCCa -3'
miRNA:   3'- -CCGUUGG-CGa--CC-----GCUCCG-----UAGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 24991 0.66 0.650836
Target:  5'- gGGCGGCgUGCUGGCGAuGGUGgugaCAaaCCg -3'
miRNA:   3'- -CCGUUG-GCGACCGCU-CCGUa---GUagGG- -5'
12472 5' -56.7 NC_003324.1 + 25431 0.67 0.568659
Target:  5'- aGGCGuugcgcagGCCGCcccagccgacccacuUGGCGA-GCAugcuuugcUCGUCCCg -3'
miRNA:   3'- -CCGU--------UGGCG---------------ACCGCUcCGU--------AGUAGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.