Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12472 | 5' | -56.7 | NC_003324.1 | + | 524 | 0.66 | 0.66599 |
Target: 5'- cGGCAgcucgaccaucuACCGCUGGauCGAGGaagggacguuUCCCg -3' miRNA: 3'- -CCGU------------UGGCGACC--GCUCCguagu-----AGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 5494 | 0.67 | 0.607446 |
Target: 5'- cGGC-GCCGCaGGUGcGGGCGcCAUCUUc -3' miRNA: 3'- -CCGuUGGCGaCCGC-UCCGUaGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 7844 | 0.66 | 0.629136 |
Target: 5'- uGCGAUCGCgccucccuGCGAGGCGUgcUCUCg -3' miRNA: 3'- cCGUUGGCGac------CGCUCCGUAguAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 8343 | 0.7 | 0.404468 |
Target: 5'- cGGUGACCGUcGGCGGGGagcugCGUCUg -3' miRNA: 3'- -CCGUUGGCGaCCGCUCCgua--GUAGGg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 9859 | 0.68 | 0.522163 |
Target: 5'- aGGgGGuCCGCUGGcCGuuacGcGCAUaCAUCCCa -3' miRNA: 3'- -CCgUU-GGCGACC-GCu---C-CGUA-GUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 12994 | 0.71 | 0.369097 |
Target: 5'- cGCuguucGCgGCUGGCGAucugcagggcGGCAUCAacgCCCg -3' miRNA: 3'- cCGu----UGgCGACCGCU----------CCGUAGUa--GGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 13161 | 0.67 | 0.582609 |
Target: 5'- cGGCGGCgGUcGGCGGcGGCGguaccggcugcaaaUCGUCaCCg -3' miRNA: 3'- -CCGUUGgCGaCCGCU-CCGU--------------AGUAG-GG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 13618 | 0.66 | 0.650836 |
Target: 5'- cGCGAagaCGCgcaGGCGAucGGCAUCcgAUCCg -3' miRNA: 3'- cCGUUg--GCGa--CCGCU--CCGUAG--UAGGg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 14991 | 0.66 | 0.661665 |
Target: 5'- cGGCAuguuguugACCGCgu-CGAGcGCGUCG-CCCu -3' miRNA: 3'- -CCGU--------UGGCGaccGCUC-CGUAGUaGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 16075 | 0.69 | 0.481222 |
Target: 5'- uGCGAagGCUGGUGAuGGCAUCG-CCg -3' miRNA: 3'- cCGUUggCGACCGCU-CCGUAGUaGGg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 16161 | 0.73 | 0.283194 |
Target: 5'- aGGC-AUCGCUGGCaccGAGGCGggcaccgCAgcUCCCg -3' miRNA: 3'- -CCGuUGGCGACCG---CUCCGUa------GU--AGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 18209 | 0.71 | 0.343995 |
Target: 5'- cGGCGucgaauacacGCCGCUGcGCGcuaaggucauGGGgGUCAUCUCg -3' miRNA: 3'- -CCGU----------UGGCGAC-CGC----------UCCgUAGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 18268 | 0.67 | 0.579383 |
Target: 5'- cGCGACCGCUGacggaaucggccgacGCGcGGGCAaUCGcugCCCc -3' miRNA: 3'- cCGUUGGCGAC---------------CGC-UCCGU-AGUa--GGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 20806 | 0.67 | 0.618285 |
Target: 5'- cGGCgGACCGUguUGGUGAcGcGCAUCGccgUUCCg -3' miRNA: 3'- -CCG-UUGGCG--ACCGCU-C-CGUAGU---AGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 21759 | 0.69 | 0.471228 |
Target: 5'- gGGCu-CUGCagGGCGAGGaacUCGUCCg -3' miRNA: 3'- -CCGuuGGCGa-CCGCUCCgu-AGUAGGg -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 23347 | 0.67 | 0.585839 |
Target: 5'- aGCucgUCGC-GGCG-GGCGUCAuugUCCCa -3' miRNA: 3'- cCGuu-GGCGaCCGCuCCGUAGU---AGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 23555 | 0.7 | 0.395426 |
Target: 5'- cGGCGGgCGCgcucGGCGAcGGUAcauccaCAUCCCa -3' miRNA: 3'- -CCGUUgGCGa---CCGCU-CCGUa-----GUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 24586 | 0.71 | 0.352224 |
Target: 5'- gGGCGACCaGCgcaGGaucauCGGGGCcguacAUCGUCCCa -3' miRNA: 3'- -CCGUUGG-CGa--CC-----GCUCCG-----UAGUAGGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 24991 | 0.66 | 0.650836 |
Target: 5'- gGGCGGCgUGCUGGCGAuGGUGgugaCAaaCCg -3' miRNA: 3'- -CCGUUG-GCGACCGCU-CCGUa---GUagGG- -5' |
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12472 | 5' | -56.7 | NC_003324.1 | + | 25431 | 0.67 | 0.568659 |
Target: 5'- aGGCGuugcgcagGCCGCcccagccgacccacuUGGCGA-GCAugcuuugcUCGUCCCg -3' miRNA: 3'- -CCGU--------UGGCG---------------ACCGCUcCGU--------AGUAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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