miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12472 5' -56.7 NC_003324.1 + 57008 0.66 0.67678
Target:  5'- cGCucuAUCGCUGGCGAGGCccgaaaggcggguggAUCuacgacgCUCg -3'
miRNA:   3'- cCGu--UGGCGACCGCUCCG---------------UAGua-----GGG- -5'
12472 5' -56.7 NC_003324.1 + 53362 0.69 0.461341
Target:  5'- --aAGCCGCgaccGGCGGGcGCgAUCAUUCCu -3'
miRNA:   3'- ccgUUGGCGa---CCGCUC-CG-UAGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 49048 0.66 0.629136
Target:  5'- ----cCCGCggcGGCGGGGCAaucCAUCCg -3'
miRNA:   3'- ccguuGGCGa--CCGCUCCGUa--GUAGGg -5'
12472 5' -56.7 NC_003324.1 + 47071 0.66 0.629136
Target:  5'- aGGCAGCC-Cga--GGGGCGUUAUCgCCg -3'
miRNA:   3'- -CCGUUGGcGaccgCUCCGUAGUAG-GG- -5'
12472 5' -56.7 NC_003324.1 + 43201 0.7 0.413638
Target:  5'- cGGCAACCuGCgGGacuuuGGCAUUAUgCCCg -3'
miRNA:   3'- -CCGUUGG-CGaCCgcu--CCGUAGUA-GGG- -5'
12472 5' -56.7 NC_003324.1 + 43047 0.83 0.058372
Target:  5'- cGGUAACgGUUcGCGAGGUGUCAUCCCa -3'
miRNA:   3'- -CCGUUGgCGAcCGCUCCGUAGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 42917 0.75 0.197712
Target:  5'- gGGCGACCaUUGGCGGucacugcgccGGCGgucUCGUCCCa -3'
miRNA:   3'- -CCGUUGGcGACCGCU----------CCGU---AGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 42691 1.15 0.000306
Target:  5'- cGGCAACCGCUGGCGAGGCAUCAUCCCa -3'
miRNA:   3'- -CCGUUGGCGACCGCUCCGUAGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 42154 0.69 0.495382
Target:  5'- aGGCucguuGCCGUaauccgugcgcuugaUGGCacguGGCAUCGUCCg -3'
miRNA:   3'- -CCGu----UGGCG---------------ACCGcu--CCGUAGUAGGg -5'
12472 5' -56.7 NC_003324.1 + 40472 0.68 0.55373
Target:  5'- aGGCGAagGCcGGUGAGGUuuuUCAcCCCu -3'
miRNA:   3'- -CCGUUggCGaCCGCUCCGu--AGUaGGG- -5'
12472 5' -56.7 NC_003324.1 + 36717 0.66 0.650836
Target:  5'- cGG-AugCGCUGGCGcuGGUagccagugacAUCAUCCg -3'
miRNA:   3'- -CCgUugGCGACCGCu-CCG----------UAGUAGGg -5'
12472 5' -56.7 NC_003324.1 + 35618 0.69 0.451565
Target:  5'- cGGCuuCUGCUGcGCGcaGCAUCAUCUg -3'
miRNA:   3'- -CCGuuGGCGAC-CGCucCGUAGUAGGg -5'
12472 5' -56.7 NC_003324.1 + 35196 0.69 0.481222
Target:  5'- cGGCGACggCGCUGGCGAcgacggaaaGGCAgaUgAUgCCa -3'
miRNA:   3'- -CCGUUG--GCGACCGCU---------CCGU--AgUAgGG- -5'
12472 5' -56.7 NC_003324.1 + 34452 0.68 0.500485
Target:  5'- uGGCAAgCGUcGGCGGGauuucgcgcuucuGCGUCGUCUUg -3'
miRNA:   3'- -CCGUUgGCGaCCGCUC-------------CGUAGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 34150 0.74 0.224155
Target:  5'- gGGCGgaGCCGCUGGCauugggcgccguGGGUAUCAUUCUa -3'
miRNA:   3'- -CCGU--UGGCGACCGc-----------UCCGUAGUAGGG- -5'
12472 5' -56.7 NC_003324.1 + 32522 0.72 0.304199
Target:  5'- -cCAAUCGCggGGCGAGGCAgcgggagagcuuuUCGUCuCCg -3'
miRNA:   3'- ccGUUGGCGa-CCGCUCCGU-------------AGUAG-GG- -5'
12472 5' -56.7 NC_003324.1 + 31841 0.69 0.481222
Target:  5'- cGGCAGgCGUUGGCGcccccaguucaAGGCAUCGg--- -3'
miRNA:   3'- -CCGUUgGCGACCGC-----------UCCGUAGUaggg -5'
12472 5' -56.7 NC_003324.1 + 31611 0.69 0.471228
Target:  5'- -aUAACgGCUGGCGuuGGCAUgCA-CCCa -3'
miRNA:   3'- ccGUUGgCGACCGCu-CCGUA-GUaGGG- -5'
12472 5' -56.7 NC_003324.1 + 31311 0.8 0.099995
Target:  5'- cGGCGGCgcuggCGCUGGCGGGGgCAUCGUCa- -3'
miRNA:   3'- -CCGUUG-----GCGACCGCUCC-GUAGUAGgg -5'
12472 5' -56.7 NC_003324.1 + 30352 0.74 0.256128
Target:  5'- gGGCGACCGUgccuUGGCcc-GCAUCAUCgCCg -3'
miRNA:   3'- -CCGUUGGCG----ACCGcucCGUAGUAG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.