miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12473 5' -57.4 NC_003324.1 + 44423 0.66 0.654235
Target:  5'- uGCGGgCAccgGGCgccgagacuucGGUCGCUGaugGCCGGc -3'
miRNA:   3'- -CGCUgGUaa-CCG-----------CCAGUGACg--CGGCC- -5'
12473 5' -57.4 NC_003324.1 + 26026 0.66 0.643536
Target:  5'- aGCGcGCCAaUGGC-GUCACcgGUcuGCCGGc -3'
miRNA:   3'- -CGC-UGGUaACCGcCAGUGa-CG--CGGCC- -5'
12473 5' -57.4 NC_003324.1 + 11471 0.66 0.643536
Target:  5'- aGgGGCaCAUU-GCGGUCAagaGCGCCGu -3'
miRNA:   3'- -CgCUG-GUAAcCGCCAGUga-CGCGGCc -5'
12473 5' -57.4 NC_003324.1 + 52393 0.66 0.622118
Target:  5'- -aGACCuugcUGG-GGUCGCaGaCGCCGGc -3'
miRNA:   3'- cgCUGGua--ACCgCCAGUGaC-GCGGCC- -5'
12473 5' -57.4 NC_003324.1 + 53117 0.66 0.622118
Target:  5'- gGCGACCAagGGCuuuGUCcUUGUGCCa- -3'
miRNA:   3'- -CGCUGGUaaCCGc--CAGuGACGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 24387 0.66 0.617836
Target:  5'- gGCuGGCCGagaUGGuCGGgcaugcggauaugCACUGCGCCGu -3'
miRNA:   3'- -CG-CUGGUa--ACC-GCCa------------GUGACGCGGCc -5'
12473 5' -57.4 NC_003324.1 + 18400 0.66 0.609278
Target:  5'- gGCGcCCGcuUUGGCGGUCucaccaagGCCGGg -3'
miRNA:   3'- -CGCuGGU--AACCGCCAGugacg---CGGCC- -5'
12473 5' -57.4 NC_003324.1 + 30754 0.67 0.600732
Target:  5'- aGUGACgGaagcacggGcGCGGUC-CUGCGCCGu -3'
miRNA:   3'- -CGCUGgUaa------C-CGCCAGuGACGCGGCc -5'
12473 5' -57.4 NC_003324.1 + 46645 0.67 0.600732
Target:  5'- cUGACCAUaGGUGG-CAagguCUGCGUgGGa -3'
miRNA:   3'- cGCUGGUAaCCGCCaGU----GACGCGgCC- -5'
12473 5' -57.4 NC_003324.1 + 26162 0.67 0.600732
Target:  5'- gGCGGCCugcaucauucuGUcGGCGGUCucgcugcgggGCUGCGUCu- -3'
miRNA:   3'- -CGCUGG-----------UAaCCGCCAG----------UGACGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 31609 0.67 0.586882
Target:  5'- gGCGGCCAUUcucacgacgaggacGGCGG--ACUGCGaCCa- -3'
miRNA:   3'- -CGCUGGUAA--------------CCGCCagUGACGC-GGcc -5'
12473 5' -57.4 NC_003324.1 + 53385 0.67 0.579449
Target:  5'- aGCaGACCuuuUUGaucuggcaucGCGGUCACgGCGCCu- -3'
miRNA:   3'- -CG-CUGGu--AAC----------CGCCAGUGaCGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 35305 0.67 0.568865
Target:  5'- cCGAUCGcgccGGCGG--AUUGCGCCGGc -3'
miRNA:   3'- cGCUGGUaa--CCGCCagUGACGCGGCC- -5'
12473 5' -57.4 NC_003324.1 + 21084 0.67 0.558329
Target:  5'- uCGGCCGccgcGGCGcGU-GCUGCGUCGGc -3'
miRNA:   3'- cGCUGGUaa--CCGC-CAgUGACGCGGCC- -5'
12473 5' -57.4 NC_003324.1 + 20284 0.67 0.54785
Target:  5'- cCGGCCAUaccgGGCGcGUUACgcGCGCCu- -3'
miRNA:   3'- cGCUGGUAa---CCGC-CAGUGa-CGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 43593 0.67 0.546806
Target:  5'- -gGGCCugauacUUGGCGGUCgcgcucgACUGCucggacagcaaGCCGGa -3'
miRNA:   3'- cgCUGGu-----AACCGCCAG-------UGACG-----------CGGCC- -5'
12473 5' -57.4 NC_003324.1 + 27186 0.68 0.537434
Target:  5'- aGCGACCGcgcUGGUGu--GCUGCGCCa- -3'
miRNA:   3'- -CGCUGGUa--ACCGCcagUGACGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 28583 0.68 0.534322
Target:  5'- -aGACCGUuuUGGCGGUucgcggcuuccgccCGCUGuCGCCc- -3'
miRNA:   3'- cgCUGGUA--ACCGCCA--------------GUGAC-GCGGcc -5'
12473 5' -57.4 NC_003324.1 + 5316 0.68 0.515791
Target:  5'- gGCGGCCAacugaUGcucgaaccggauuGCGGUCGCcGCGCCa- -3'
miRNA:   3'- -CGCUGGUa----AC-------------CGCCAGUGaCGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 49877 0.68 0.505609
Target:  5'- aGUGAgCc--GGCGGgcaaagaUCGCUGCGUCGGc -3'
miRNA:   3'- -CGCUgGuaaCCGCC-------AGUGACGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.