Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12480 | 3' | -63.2 | NC_003324.1 | + | 4938 | 0.68 | 0.237887 |
Target: 5'- cAGGGCucgaCCGGCCGCaacguuguuGcCGGCGCCAu -3' miRNA: 3'- uUCCCGc---GGUUGGCG---------CaGCCGCGGUc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 48687 | 0.67 | 0.282452 |
Target: 5'- -cGGGCGCCGACCuGCGugucgauuggguUCGGCuucuUCGGg -3' miRNA: 3'- uuCCCGCGGUUGG-CGC------------AGCCGc---GGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 31118 | 0.67 | 0.289333 |
Target: 5'- cAGGaguugaaCGCCGACCGCGcCGGuCGCUAc -3' miRNA: 3'- uUCCc------GCGGUUGGCGCaGCC-GCGGUc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 17284 | 0.66 | 0.295638 |
Target: 5'- --cGGCGCUcaagaacgccgaaAGCCGCGUCcgacagacGCGCCAGc -3' miRNA: 3'- uucCCGCGG-------------UUGGCGCAGc-------CGCGGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 54960 | 0.66 | 0.31371 |
Target: 5'- -cGGGCGCCGACauuCGCGagcauccgggccugCGGgGUCGGa -3' miRNA: 3'- uuCCCGCGGUUG---GCGCa-------------GCCgCGGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 51310 | 0.66 | 0.325709 |
Target: 5'- uAAGGGCGCgGACCa--UCG-CGCCGGa -3' miRNA: 3'- -UUCCCGCGgUUGGcgcAGCcGCGGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 49443 | 0.66 | 0.333379 |
Target: 5'- cGAGGuCGCCcgaucgucgacACCGCuGUUGGCGCCGc -3' miRNA: 3'- -UUCCcGCGGu----------UGGCG-CAGCCGCGGUc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 16321 | 0.73 | 0.100264 |
Target: 5'- uAGGGcccuGCGCUGGCCGCGUCGGCacgGCCu- -3' miRNA: 3'- -UUCC----CGCGGUUGGCGCAGCCG---CGGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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